Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00589 ATGAAAATTGATTTGTTTTTCAAGAACCAGAAGTTTCAGAAATGTGAAATGGAATATGGCGTTTATGTGCAACACTCTGATAATAATATGACTCTGAATTGTAAAGTTGTTGTGACACCATCAGAAACCAAACAAAAATTAGATTATGACTCTGATGGTGATTCTGTTGATACTACAACTTTCAAACAGTTGGTTGGTTCTCTAAGGTATTTATGCAATACTAGACCTGACATTTTTTATGCAGTTGGATTGTTAGCAGATTCACGAACAGAACCAGAATTAGTAAGTTATTCTGATTCTGACTGGTGTGGAGACAAAGTCGACAGGAGAAGTACTTCTGGGTACTTGTTTAAATTTCTGGGAGGTCCCATTTCCTGGAGTTCCAAGAAGCATCCTGTCGTGGCTCTGTCAACGTGTGAAGCTGAGTATATCGCAGGGGCTATATCTGCTTGTCAAGCTGTTTGGCTTCTGAATCTCTTGCATGATTTGAAGGTTGAAGTTGAGGAACCTCTTAAGCTGATGATTGATAATAAGTCTGCAATTGATCTTGCCAAGAATCCAGTGCTACATGGAAGAAGCAAGCACATTGAGACGAAGCATCATTTTCTCAGAAGTCAAGTGCAGAAAGGAGTGTTAGAAGTTCTGCACTGCAACATCCAGAAACAGCTAGCATATCTTCTGACGAAGGCAGTTAAGACATACCAATTTCTTCGCTTGAGAGATGAAATTGAGAGGATAACTCATATTGCAGTTGAGCGTAATCGAAGAAAACAGATGAATGAGTACCTTGTTGTGCTCAGATCCTTGATGCCTCGTTCTTATGTAAAAAGGGATGATCAAGCATCAATAGTTGGAGGCGCAATCAACTTCTTAAAAGAACTAGAGCATATTATCCAATCCATAAAAGGACAAAAGAAAACAATAGAACAACAATCACATGAAAATGGATTCAATAATAGCTCATCATCACCCTTTGCTGATTTTTTCATGTTCCCTCAATACTCCACGTGTGCACCTCAGAGCAACACGTGCTACCCTGCTAACCCTAATCAGTCACGTGCCATGGCAGACGTTGAAGTGACATTGGTTGATAGCCATGTCAATATAAAGATAATGTTGAAGAAACAACATGAACATGTGACGAAGATGGTTGTTGGGATTCAAAACCTTGACCTCAATATTCTTCACCTCAATGTTTCTACTCTCGATCATTTGGTTCTTGTCTCGGTTAGTGTCAAAGTAGAGGAAGGGTGTGAACTGAAGACGGTGGATGAAATTGCAGCTGCTATGAATCAACTATCACTGAAAATCCAGGCAGAAGCTGTATTATAA 1332 0.3926 MKIDLFFKNQKFQKCEMEYGVYVQHSDNNMTLNCKVVVTPSETKQKLDYDSDGDSVDTTTFKQLVGSLRYLCNTRPDIFYAVGLLADSRTEPELVSYSDSDWCGDKVDRRSTSGYLFKFLGGPISWSSKKHPVVALSTCEAEYIAGAISACQAVWLLNLLHDLKVEVEEPLKLMIDNKSAIDLAKNPVLHGRSKHIETKHHFLRSQVQKGVLEVLHCNIQKQLAYLLTKAVKTYQFLRLRDEIERITHIAVERNRRKQMNEYLVVLRSLMPRSYVKRDDQASIVGGAINFLKELEHIIQSIKGQKKTIEQQSHENGFNNSSSSPFADFFMFPQYSTCAPQSNTCYPANPNQSRAMADVEVTLVDSHVNIKIMLKKQHEHVTKMVVGIQNLDLNILHLNVSTLDHLVLVSVSVKVEEGCELKTVDEIAAAMNQLSLKIQAEAVL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00589 443 Pfam Helix-loop-helix DNA-binding domain 245 295 IPR011598 GO:0046983
Vifa1g00589 443 PANTHER GAG-POL-RELATED RETROTRANSPOSON 2 245 - -
Vifa1g00589 443 Coils Coil 291 311 - -
Vifa1g00589 443 CDD RNase_HI_RT_Ty1 97 231 - -
Vifa1g00589 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 294 IPR011598 GO:0046983
Vifa1g00589 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 314 IPR036638 GO:0046983
Vifa1g00589 443 Gene3D - 236 321 IPR036638 GO:0046983
Vifa1g00589 443 SMART finulus 249 300 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00589 Vifa-Chr1 99802860 99805777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00589 240 414 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 53.846 3.85e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g00589 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00589 - - psat:127131938 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00589 1 99802860 99805777 Vifa1g00589 1 99802860 99805777 ECH
Vifa1g00589 1 99802860 99805777 Vifa2g03455 2 998773451 998774972 PCT