Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00585 ATGGCTTCAATTACTCTTTCTCCAAATGCTTCACCTGTTGTTGCTTTGACTCCATCATCTAGTGTTGTTGTTTTGTCACCACCTCCATCACCTATACCGGGTTCTTCTCTGTCGAATCAAACATCGAATTCTCCTCCTCCTTCGTCGCCTTCTGACCCTTCAGCTCTTCCTCCTTCTGACCCTTCAGCTCCTCCTCCTTCTCCTCCACATACTGTGCCTGTTACTCCTCCTCCTTCGCCGCCCGTTTCTCCTCCTCCTTCGCCGCCCGTTTCTCCTCCTCCGTCTCCGTCTCCACCACTTTCTCCTCCACCATCAACTACACCGCCGCCAAGTTCTCCACCACCATCGCCACGTGCATCACCACCTCCACCAGTTGTAGCATCACCACCTCCTGCACCGCTTGTAACATCACCACCTCCTGCACCAGCTACTACCAATTCCCCTCCTCCTCCTCCACCTGCTACTACTGCCCCTCCTCCAGATGAAACTTCACCTACGCCTCCAAACTTCTCTCCACCACCTCCAGCGGCGGGTTCCCCTCCCCCTAAATCATCGAAGCCATCGCCTTCTCAAACAATTTCTCCGTCTCCACCACCTCCTTCTCCAGATAATGAATCAAAGCCACCATCTGCCAATCCTCCTCCTGCACCACCACACGCAAAGCCACCGAAAAGTACTCCTTCGCCTCCCTTACGTGACGCATCCCCTCCATCAGTTTCTCAACCACCTCCTTCACATGATGCATCCCCTCCATCTGTTTCTCAATCACCTCCTTCCCCTTCAACTGTTCCACCTCCACCCACATTGCCATCAACTCTTACTTCAGGACCTGCAGCAACTCCTACTAACGAAACAGTACATGGTGACAGTCCAACTGTGCCATTTCCATCTATACCAAGTGTTAACGGTTCTGATAATATAGCCACAAACAACGCTCCTTCACATTCAGGAGGGTTAAATACCGGAGCTGCTGTTACTATTGGCGTTGTAGTTAGTTTAATTGTCCTCAGCCTTCTTGGTATCGCTGTGTGCTTTTTACACAAAAAGAAAAAGGGAAAAGGATCCAGATCTGATTATGCTGCGCCTTCTCCATATACCTCATCTCACAATTCAGGGACCTTGTTCTTAAAGCCATACGCTCCAGCCAATTTGAATGGGAGTGGCAATGGCAGTGAATTTGTGTATTCACCACCAGAGCCAAGTGGAGTAAATAATTCAAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTTTTCAGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTGGTGGACAAGGGGAGCGTGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTCGTCTACGACTTTGTTCCCAACGATACTCTTCATTATCATCTACATGACGAAAAAGCACCCATGTTGAATTGGCCTATCAGAGTTAAGGTTGCTGCCGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTAGTTTCAGATTTTGGGCTTGCGAAATTAGCATTAGATTCAAACACACATGTAACTACACGTGTAATGGGAACATTTGGGTATATGGCACCAGAGTATGCCACGAGTGGAAAGTTGACTGATAAGTCTGATGTATATTCCTTTGGTGTCGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCCGTAGATGCATCTCAGCCACTTGGTGATGAAAGCCTGGTTGAATGGGCTCGGCCTCTATTGATTGAAGCACTGGATACTGAGGAGTTTGAAATTTTGGTGGATCCAAGACTGGAAAAGAACTACAACAGAAACGAAATGTTTAGAATGATTGAGGCTGCTGCAGCCTGCGTGCGTCACTCATCAGTTAAGAGGCCACGAATGAGCCAGGTTATGAGAGCCTTTGATTCCATGGCCGAGTTTTCAGATCTGAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAGATCAAAATGTTCAGGAGAATGGCTTTTGGAAGCCAAGATAGTTCCAGTTTCTTTAATGATTCTCAAAGTAGCTATGGAAGTAGGAATCAAGACTCTACAACTATGCTCCCTCAAAATAAATCTCGGCCTTGGAACGTTCGAGATGACCCTTTATAG 2325 0.4662 MASITLSPNASPVVALTPSSSVVVLSPPPSPIPGSSLSNQTSNSPPPSSPSDPSALPPSDPSAPPPSPPHTVPVTPPPSPPVSPPPSPPVSPPPSPSPPLSPPPSTTPPPSSPPPSPRASPPPPVVASPPPAPLVTSPPPAPATTNSPPPPPPATTAPPPDETSPTPPNFSPPPPAAGSPPPKSSKPSPSQTISPSPPPPSPDNESKPPSANPPPAPPHAKPPKSTPSPPLRDASPPSVSQPPPSHDASPPSVSQSPPSPSTVPPPPTLPSTLTSGPAATPTNETVHGDSPTVPFPSIPSVNGSDNIATNNAPSHSGGLNTGAAVTIGVVVSLIVLSLLGIAVCFLHKKKKGKGSRSDYAAPSPYTSSHNSGTLFLKPYAPANLNGSGNGSEFVYSPPEPSGVNNSRSWLTYEELIQATNGFSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDFVPNDTLHYHLHDEKAPMLNWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLIEALDTEEFEILVDPRLEKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVMRAFDSMAEFSDLNNGMKPGQSSVFDSAQQSAQIKMFRRMAFGSQDSSSFFNDSQSSYGSRNQDSTTMLPQNKSRPWNVRDDPL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00585 774 ProSiteProfiles Protein kinase domain profile. 422 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00585 774 FunFam proline-rich receptor-like protein kinase PERK8 497 709 - -
Vifa1g00585 774 Gene3D Transferase(Phosphotransferase) domain 1 497 713 - -
Vifa1g00585 774 PRINTS Proline rich extensin signature 76 93 - -
Vifa1g00585 774 PRINTS Proline rich extensin signature 29 50 - -
Vifa1g00585 774 PRINTS Proline rich extensin signature 53 69 - -
Vifa1g00585 774 PRINTS Proline rich extensin signature 94 119 - -
Vifa1g00585 774 MobiDBLite consensus disorder prediction 738 774 - -
Vifa1g00585 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Vifa1g00585 774 MobiDBLite consensus disorder prediction 738 764 - -
Vifa1g00585 774 Pfam Protein tyrosine and serine/threonine kinase 425 692 IPR001245 GO:0004672|GO:0006468
Vifa1g00585 774 MobiDBLite consensus disorder prediction 46 272 - -
Vifa1g00585 774 SMART serkin_6 422 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00585 774 Gene3D Phosphorylase Kinase; domain 1 398 496 - -
Vifa1g00585 774 MobiDBLite consensus disorder prediction 18 309 - -
Vifa1g00585 774 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 332 742 IPR047117 -
Vifa1g00585 774 CDD STKc_IRAK 428 692 - -
Vifa1g00585 774 SUPERFAMILY Protein kinase-like (PK-like) 399 692 IPR011009 -
Vifa1g00585 774 MobiDBLite consensus disorder prediction 273 309 - -
Vifa1g00585 774 FunFam Proline-rich receptor-like protein kinase PERK8 395 496 - -
Vifa1g00585 774 ProSitePatterns Protein kinases ATP-binding region signature. 428 449 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00585 Vifa-Chr1 99661164 99665116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00585 381 702 Receptor kinase-like Gene Family AT4G02010 50.599 3.13e-98 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g00585 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00585 - - gmx:100784873 790.801