Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00584 ATGTTACTTCCGTGTTTGATGGAAATCATGGCGAGGAAGAAACAGAATAACTGTTGGATTCACGTTACAAGAGTAGCAAATGGTCTTTTGTGGAAATGCAATTATTGTGAGTTTACTTTTGAGGGTAGTACTAGTGCTTCAAAAGTTAAAGCACACTTGGGGCTGGATGGCAAAACAGGAAACATTACACCATGCTCTTATCATGCTCACCAACAAGTTCTCAACAATATCGCATCCTCTTCAAGTGAGAACTTGAGCATCCGTGATAGAAGTATCTTTGAGAGTAAGATTAATAACTTAAAAGGAATGGTTATTGATCTAGAATGTGAGGAAAATGATATTGCAAAACAAACTCAATGGTTGGAGTCTCGGGGCAGAAAGCGCAAGCCTGAAGTTGATGCATGGATAAAAGAATTACATGAATTGAAAGAAAGAGTGGATGCTATTAATAACTTGGATGACATGAATGAGTTGTTCAAAGATATGAAACGACACAAGGGAGAAAAACCTCTCACTTTGTCCACTGAATTTGTCGGGAAAGAATTAGACTTTAATATCAAGAAAGTGATTCAACTTCTAAATGATGACCAAGTTTTTGTTATCGGTATATATGGAATGGGAGGAGTGGGAAAAACTTTACTTGCTACTCTTGTGGAGAATGAAATAAAAAAGAAAAGAACTTTCAATGATGTGTTTTGGGTCACTGTTTCTCCCAATTTTACCATCTCAAAACTGCAATACGATATCGCAAAACGAATAGGCGTGGAGCTTGATGAAGACAATGAGAGAATTAGAGCAAACAAATTGTCGACGACGTTGGAGACAAAGGAGAAGTCTGTTCTTATTTTGGATGATGTTTGGAGATACATTGATTTGGAAAAGGTGGGTGTTTCTACAAAAGTGAATGGAATTAAAGTGATTCTCACAACGCGTTTGAAACATGTGTGTCAACAGATGGATTGCTTGCCAAGTCATATGATAAAAGTGATACCTCTCTACGATGTAGATGAAGGTTGGGAGTTATTTAAGGTAAAACTTGGACACTACGGAACACCTGCTACACTCTCCCCTGAAATTGAAACTGTTGCAAGAGATATTGTAGATCGGTTTGCGGGTTTGCCGCTTGGAATCAGTGTGATGGCTAGAACCATGAAAGGAATTGATGAGATTGATCAATGGAAACATTCATTGAATAAACTTAACAAATTGGAAATGGGACAAGAGGTGATAGAAGAAGTTTTCAAGGTATTAAAACGTAGTTATGATAATTTGATGGAAAAAGACTTGCGAAACTGTTTTTTGTATTGTGCACTACTATCTAGTTACGAAGAGAATGACAGAGAAGAAACGATTATGAAACTTGTTGACAATGGACTGATAAATGGGAATAGGTGTTTGCAAGAAATATTCGATGAAGGGCAAACCATATTAGATAAGCTCAGATCCCACAGTTTGATGAGTGGTTTTGATCATTCATTTGAATTTAATTATCGCTTGGTGATAGACACGGCATGTTATATTATGAAAGAAAGTAAGAGAAATGCTATGGTGAAATTAGAGAACGAATTGACAAAGACAAACATCACGCATGAATGGGCCGCTGATTTAGAGTTTGTTCATATGTGGGCTGGTGAATCAAATGATATTGAAGAAATTCCAGAGGGCATGTCACCTTATTGTCCGAGGTTGTCCACCTTGATTATAAATCAATTGGCCGTTCAACATATTCCAGAGAGTTTTTTCAAATGTATGAATACCCTAACAATACTCGATCTGTCATATAGTAAAAGACTAGAATGCTTGCCAAATTCTATCAGTAAGATGAAGTGTCTTGTTTCTTTAGTACTAATAGAATGTAATTCACTTAAACATGTGCCGCCATTAGGAGAATTGAAGGTATTGTCAAGATTGGTTCTTTCAAATTGTTCCATTGAAGAACTACCACAAGGTTTGGATAAGCTACAGAATTTGAAATGGCTTGATCTATCTTTCAACAAGAGTTTGAATTTTGAATTAGGGTCTTTGAATTTGACCAAAATACAATACCTTGATCTCCAAGGTACTCGTACAATGATTACTGTCGAAGATATTCAAAGAATGACTGTGTTGGAATGTTTTGGAGGTGCTTTTAACTGCAAACATTACAACCAGTACTTGGAGAAATATCTTGGCACGCGATCTCGGCTCCAAGCATATTATCTCATATTAGGAAATGTATATGGTGAATCAAGAAGTGTTTTGCGGAATGATATTTATTTGAAAGCATTTGATCCAAATGATCCTGAAGTTATGACTATACTATTTAGAGACTGTGGTCATTTCTCCCACATACTACCTAAAGATCTTACATGTTTGAATATAGATAAAAATGATCATTGGGTTTGCTTATGTGATGCTCTCTCATGTAACACTAGTTCTTCTTTGAAGAAAATTGGAGCTTATAATTGCCAACAGCTAGAGAGGTTGTTTTGTTTATCTGATTCTTGTTCCTTTTGTACCAAGATTCACAACCTTGAAATGTTGGAACTTGAGAGTTTGGAAAGGTTAACCGTCATTGACGTTAATGCAAGACAAACTTGGTCATTGGGTGGCATATTCTCTTGTCTAAAAAGTATTTATGTTTTTGAGTGCCATTTGATAGAGAAGTTAATTACACCAAAGTTAGTTGGACAAGTTCAAAATCTGGAAATAATTTCAGTAAGGCGTTGCAATTCAATGAAAGAGATATTAGCGGTGAGCGACGACATCAGACTTCCCAAGCTAAAAAGATTGATATTGGATTATTTACCACAATTGAAGATTAAAAAGAAGAAGGGAAAAGGATCCAAATCTGATTATGCCGCGCCTCATCTCACAATCCAGGTACCTTCTACAAATGGGTCTTCGGAGCAGAATTTGTTGGGAGAAGCTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTAATCTGGTTTCTTTGGTTGGTTACTGTATATCTGTGCATCAAAGATTGCTCGTCTATGACTTTGCTCTGGTTTCAGATTTCAGGCTTGCGAAATTAGTATTGGATTCAAACACACATGTAACTACACGGTTTGTCAATGCCTCTCAGCCAATTGGTGACAAGAGCCTGGTTGAATGGGTTCCAGATTTAAATAGTATCTTATCTTTATTTCAAGGCTCAGATACTGAGGACTTTGAAACTTTGGTGGATCCAAGACTGGAAAAGAACTGCAACAGAAACGAAATGTTTAGAATGATTGAGGCCGCGACAGCCTGCGTGCGTCACTCTTCAGTTAAGAGGCCACAGATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCGGATCTGAATAACGGAATGAAACCGAGGCAGAGTTCAGAGTTTGATTTTGCACAACAACTTGCACAGACCAGAATGCCGAGAAGGAAGGCTTTTGGAAGCCAAGATAGTTCCAGTTTCTTTAATGATTCTCAAAGTAGCTCTGGAAGTAGGAATCAAGACTCTACAACTATGCTCCCACAAAATAAATCTAGGCCTTGGAACGTTCGAGACGACCCTTTATAG 3654 0.3755 MLLPCLMEIMARKKQNNCWIHVTRVANGLLWKCNYCEFTFEGSTSASKVKAHLGLDGKTGNITPCSYHAHQQVLNNIASSSSENLSIRDRSIFESKINNLKGMVIDLECEENDIAKQTQWLESRGRKRKPEVDAWIKELHELKERVDAINNLDDMNELFKDMKRHKGEKPLTLSTEFVGKELDFNIKKVIQLLNDDQVFVIGIYGMGGVGKTLLATLVENEIKKKRTFNDVFWVTVSPNFTISKLQYDIAKRIGVELDEDNERIRANKLSTTLETKEKSVLILDDVWRYIDLEKVGVSTKVNGIKVILTTRLKHVCQQMDCLPSHMIKVIPLYDVDEGWELFKVKLGHYGTPATLSPEIETVARDIVDRFAGLPLGISVMARTMKGIDEIDQWKHSLNKLNKLEMGQEVIEEVFKVLKRSYDNLMEKDLRNCFLYCALLSSYEENDREETIMKLVDNGLINGNRCLQEIFDEGQTILDKLRSHSLMSGFDHSFEFNYRLVIDTACYIMKESKRNAMVKLENELTKTNITHEWAADLEFVHMWAGESNDIEEIPEGMSPYCPRLSTLIINQLAVQHIPESFFKCMNTLTILDLSYSKRLECLPNSISKMKCLVSLVLIECNSLKHVPPLGELKVLSRLVLSNCSIEELPQGLDKLQNLKWLDLSFNKSLNFELGSLNLTKIQYLDLQGTRTMITVEDIQRMTVLECFGGAFNCKHYNQYLEKYLGTRSRLQAYYLILGNVYGESRSVLRNDIYLKAFDPNDPEVMTILFRDCGHFSHILPKDLTCLNIDKNDHWVCLCDALSCNTSSSLKKIGAYNCQQLERLFCLSDSCSFCTKIHNLEMLELESLERLTVIDVNARQTWSLGGIFSCLKSIYVFECHLIEKLITPKLVGQVQNLEIISVRRCNSMKEILAVSDDIRLPKLKRLILDYLPQLKIKKKKGKGSKSDYAAPHLTIQVPSTNGSSEQNLLGEAGFGCVYKGLLDGREVAVKQLKIGSGQGEREFRAEVETISRVHHRNLVSLVGYCISVHQRLLVYDFALVSDFRLAKLVLDSNTHVTTRFVNASQPIGDKSLVEWVPDLNSILSLFQGSDTEDFETLVDPRLEKNCNRNEMFRMIEAATACVRHSSVKRPQMSQVMRAFDSMAEFSDLNNGMKPRQSSEFDFAQQLAQTRMPRRKAFGSQDSSSFFNDSQSSSGSRNQDSTTMLPQNKSRPWNVRDDPL 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00584 1217 Gene3D - 334 425 IPR042197 -
Vifa1g00584 1217 Gene3D Transferase(Phosphotransferase) domain 1 1057 1157 - -
Vifa1g00584 1217 Gene3D Phosphorylase Kinase; domain 1 937 1035 - -
Vifa1g00584 1217 Gene3D Ribonuclease Inhibitor 521 733 IPR032675 -
Vifa1g00584 1217 Coils Coil 509 529 - -
Vifa1g00584 1217 ProSiteProfiles Protein kinase domain profile. 961 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00584 1217 Pfam NB-ARC domain 186 423 IPR002182 GO:0043531
Vifa1g00584 1217 SUPERFAMILY Protein kinase-like (PK-like) 951 1137 IPR011009 -
Vifa1g00584 1217 Gene3D Ribonuclease Inhibitor 778 936 IPR032675 -
Vifa1g00584 1217 PRINTS Disease resistance protein signature 652 668 - -
Vifa1g00584 1217 PRINTS Disease resistance protein signature 200 215 - -
Vifa1g00584 1217 PRINTS Disease resistance protein signature 273 287 - -
Vifa1g00584 1217 PRINTS Disease resistance protein signature 370 384 - -
Vifa1g00584 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 436 IPR027417 -
Vifa1g00584 1217 ProSiteProfiles Zinc finger BED-type profile. 13 77 IPR003656 GO:0003677
Vifa1g00584 1217 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 118 1091 - -
Vifa1g00584 1217 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 933 1035 - -
Vifa1g00584 1217 SMART tyrkin_6 961 1137 IPR020635 GO:0004713|GO:0006468
Vifa1g00584 1217 MobiDBLite consensus disorder prediction 1167 1217 - -
Vifa1g00584 1217 Gene3D - 155 327 IPR027417 -
Vifa1g00584 1217 Coils Coil 132 152 - -
Vifa1g00584 1217 SMART AAA_5 197 332 IPR003593 GO:0016887
Vifa1g00584 1217 MobiDBLite consensus disorder prediction 1173 1207 - -
Vifa1g00584 1217 SUPERFAMILY L domain-like 545 931 - -
Vifa1g00584 1217 Pfam Protein tyrosine and serine/threonine kinase 965 1039 IPR001245 GO:0004672|GO:0006468
Vifa1g00584 1217 FunFam Probable disease resistance protein At1g61300 163 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00584 Vifa-Chr1 99008280 99013446 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00584 1036 1196 Trihelix Transcription Factor Family AT5G38560 48.293 9.35e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g00584 NB-ARC 6.7e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00584 - - mtr:25497664 1030.39