Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00581 ATGAGTGGTTTTGATCATTCATTTGAATTTAATTATCGCTTGGTGATAGACACGGCATGTTATATTATGAAAGAAAGTAAGAGAAATGCTATGGTGAAATTAGAGAACGAATTGACAAAGACAAACATCACGCATGAATGGGCCGCTGATTTAGAGTTTGTTCATATGTGGGCTGGTGAATCAAATGATATTGAAGAAATTCCAGAGGGCATGTCACCTTATTGTCTGAGGTTGTTCACCTTGGTTATAAATCAATTGGCCGTTCAACATATTCCAGAGAGTTTTTTCAAATGTATGAATACCCTAACAATACTCGATCTGTCATATAGTAAAAGACTAGAATGCTTGCCAAATTCTATCAGTAAGATGAAGTCTCTTGTTTCTTTAGTACTAATAGAATGTAATTCACTTAAACATGTGCCGCCATTAGGAGAATTGAAGGTATTGTCAAGATTGGTTCTTTCAAATTGTTCCATTGAAGAACTACCACAAGGTTTGGATAAGCTACAGAATTTGAAATGGCTTGATCTATCTTTCAACAAGAGTTTGAATTTTGAATTAGGGTCTTTGAATTTGACCAAAATACAATACCTTGATCTCCAAGGTACTCGTACAATGATTACTGTCGAAGATATTCAAAGAATGACTGTGTTGGAATGTTTTGGAGGTGCTTTTGACTGCAAACATTACAACCAGTACTTGGAGAAATATCTTGGCACGCGATCTCGGCTCCAAGCATATTATCTCATATTAGGAAATGTATATGGTGAATCAAGAAGTGTTTTGCGGAATGATATTTATTTGAAAGCATTTGATCCAAATGATCCTGAAGTTATGACTATACTATTTAGAGACTGTGGTCATTTCTCCCACATACTACCTAAAGATCTTACATGTCTGAATATAGATAAAAATGATCATTGGGTTTGCTTATGTGATGCTCTCTCATGTAACACTAGTTCTTCTTTGAAGAAAATTGGAGCTTATAATTGCCAACAGCTAGAGAGGTTGTTTTGTTTATCTGATTCTTGTTCCTTTTGCACCAAGATTCACAACCTTGAAATTTTGGAACTTGAGAGTTTGGAAAGGTTAACCGTGATTGACGTTAATGCAAGACAAACTTGGTCATTGGGTGGCATATTCTCTTGTCTAAAAAGTATTTATGTTTTTGAGTGCCATTTGATAGAGAAGTTAATTACACCAAAGTTAGTTGGACAAGTTCAAAATCTGGAAATAATTTTAGTAGGGCGTTGCAATTCAATGAAAGAGATATTAGCGGTGAGCGACGACATCAGACTTCCCAAGCTAAAAAGATTGATATTGGATTATTTACCACAATTGAAGATTGTATGTAAAGGGAGTATATATTGTGGATCTTTACCTCCAGAATTCACCATCTCCAACTGTCCAAGTTTAGAACGATACCCTACAATTAAAAAGTTAAAAAGAAGAAGGGAAAAGGATCCAAATCTGATTATGCCGCGCCTCATCTCACAATCCAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTCTTCGGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGACACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGTGCATCAAAGATTGCTCGTCTATGACTTTGCTCTTGTTTCAGATTTCAGGCTTGCGAAATTAGCATTGGATTCAAACACACATGTAACTACACGGGTCGGAAGCCCGTCGATGCCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATAGTATCTTATCTTTATTTCAAGGCTCGGATACTGAGGACTTTGAAACTTTGGTGGATCCAAGACTGGAAAAGAACTGCAACAGAAACGAAATGTTTAGAATGATTGAGGCCGCGACAGCCTGCATGCGTCACTCTTTAGTTAAGAGGCCACATATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCGGATCCGAATAACGGAAGGAAACCGAGGCAGAGTTCAGAGTTTGATTTTGCACAACAACTTGCACAGATCAGAATGTCGAGAAGGAAGGCTTTTGGAAGCCAAGATAGTTCCAGTTTCTTTAATGATTCTCAAAGTAGCTATGGAAGTATGATACTTGACAGAGGTTTGGTTGTTTTGAATGTGATGATAGGCAGGCAGCTCTTAGGCAGGTTTGAGGTCTTTGGCATATTTGATGCTTCAGGTTTAGGCAGGTTGAGCTTGATAGGTCTAATGGCTTTGGTTGGTAAGGCTAATGCAGGTCTTGGCCTTGAACAGGGTCTTACTGGTTTTGGCTTTTTATTTGTGCTTAGGCAGATATCGCCGGAATCTTCACATTGCCGCCGTTCTCCGTCATCTCCAATCGGGAAAATTCTAATCATGCCTCCGCAAAGACAAGAACTGTGGTGGAGACATGTCATTAGAGTCGCAAATGAACAAGTTCACAACAGTACTGCACTGCTTAATCCAGATGCAGAAATGCCAATTGATTCCATGGCCGAGTTTTTGGATCTGAATAGTGGAATGAAACCGGAGCAGAGTTCAATGTTTGATTCTGCGCAACAATCTGCACGTATCAAAATGTTTAGGAGGATGGAGTTTGGAAGCCAAGATAGTACCAGTGTCTTCAATAATACTCTTTGCCATATGGCTCAGGACACGTTAACATGTTAG 2799 0.3891 MSGFDHSFEFNYRLVIDTACYIMKESKRNAMVKLENELTKTNITHEWAADLEFVHMWAGESNDIEEIPEGMSPYCLRLFTLVINQLAVQHIPESFFKCMNTLTILDLSYSKRLECLPNSISKMKSLVSLVLIECNSLKHVPPLGELKVLSRLVLSNCSIEELPQGLDKLQNLKWLDLSFNKSLNFELGSLNLTKIQYLDLQGTRTMITVEDIQRMTVLECFGGAFDCKHYNQYLEKYLGTRSRLQAYYLILGNVYGESRSVLRNDIYLKAFDPNDPEVMTILFRDCGHFSHILPKDLTCLNIDKNDHWVCLCDALSCNTSSSLKKIGAYNCQQLERLFCLSDSCSFCTKIHNLEILELESLERLTVIDVNARQTWSLGGIFSCLKSIYVFECHLIEKLITPKLVGQVQNLEIILVGRCNSMKEILAVSDDIRLPKLKRLILDYLPQLKIVCKGSIYCGSLPPEFTISNCPSLERYPTIKKLKRRREKDPNLIMPRLISQSRSWLTYEELIQATNGSSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGSGQGEREFRAEVDTISRVHHRHLVSLVGYCISVHQRLLVYDFALVSDFRLAKLALDSNTHVTTRVGSPSMPLSQLVMRAWLNSILSLFQGSDTEDFETLVDPRLEKNCNRNEMFRMIEAATACMRHSLVKRPHMSQVMRAFDSMAEFSDPNNGRKPRQSSEFDFAQQLAQIRMSRRKAFGSQDSSSFFNDSQSSYGSMILDRGLVVLNVMIGRQLLGRFEVFGIFDASGLGRLSLIGLMALVGKANAGLGLEQGLTGFGFLFVLRQISPESSHCRRSPSSPIGKILIMPPQRQELWWRHVIRVANEQVHNSTALLNPDAEMPIDSMAEFLDLNSGMKPEQSSMFDSAQQSARIKMFRRMEFGSQDSTSVFNNTLCHMAQDTLTC 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00581 932 SUPERFAMILY Protein kinase-like (PK-like) 496 690 IPR011009 -
Vifa1g00581 932 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 636 711 IPR047117 -
Vifa1g00581 932 Pfam Protein tyrosine and serine/threonine kinase 520 593 IPR001245 GO:0004672|GO:0006468
Vifa1g00581 932 SUPERFAMILY L domain-like 44 480 - -
Vifa1g00581 932 Gene3D Ribonuclease Inhibitor 36 248 IPR032675 -
Vifa1g00581 932 ProSitePatterns Protein kinases ATP-binding region signature. 522 543 IPR017441 GO:0005524
Vifa1g00581 932 Gene3D Transferase(Phosphotransferase) domain 1 622 711 - -
Vifa1g00581 932 Coils Coil 24 44 - -
Vifa1g00581 932 Gene3D Phosphorylase Kinase; domain 1 497 590 - -
Vifa1g00581 932 FunFam Proline-rich receptor-like protein kinase PERK8 489 590 - -
Vifa1g00581 932 Gene3D Ribonuclease Inhibitor 297 488 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00581 Vifa-Chr1 98964047 98988038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00581 871 924 Trihelix Transcription Factor Family AT5G38560 50.909 2.65e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g00581 PK_Tyr_Ser-Thr 1.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00581 - - mtr:25497664 496.508