Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00580 ATGGGAGGAGTGGGAAAAACTTTACTTGCTACTCTTGTGGAGAATGAAATAAAAAAGAAAAGAACTTTCAATGATGTGTTTTGGGTCACTGTTTCTCCCAATTTTACCATCTCAAAACTGCAATACGATATCGCAAAACGAATAGGCGTGGAGCTTGATGAAGACAATGAGAGAATTAGAGCAAACAAATTGTCGACGACGTTGGAGACAAAGGAGAAGTCTGTTCTTATTTTAGATGATGTTTGGAGATACATTGATTTGGAAAAGGTGGGTGTTTCTACAAAAGTGAATGGAATTAAAGTGATTCTCACAACGCGTTTGAAACATGTGTGTCAACAGATGGATTGCTTGCCAAGTCATATGATAAAAGTGATACCTCTCTACGATGTAGATGAAGGTTGGGAGTTATTTAAGGTAAAACTTGGACACTACGGAACACCTGCTACACTCTCCCCTGAAATTGAAACGGTTGCAAGAGATATTGTAGATCGGTTTGCGGGTTTGCCGCTTGGAATCAGTGTGATGGCTAGAACCATGAAAGGAATTGATGAGATTGATCAATGGAAACATTCATTGAATAAGCTTAACAAATTGGAAATGGGACAAGAGGTGATAGAAGAAGTTTTCAAGGTATTAAAACGTAGTTATGATAATTTGATGGAAAAAGACTTGCGAAACTGTTTTTTGTATTGTGCACTACTATCTAGTTACGAAGAGAATGACAGAGAAGAAACGATTATGAAACTTGTTGACAATGGACTGATAAATGGGAATAGGTGTTTGCAAGAAATATTCGATGAAGGGCAAACCATATTAGATAAGCTCAGATCCCACAGTTTGATGAGTGGTTTTGATCATTCATTTGAATTTAATTATCGCTTGATGATAGACACGGCATGTTATATTATGAAAGAAAGTAAGAGAAATGCTATGGTGAAATTAGAGAACGAATTGACAAAGACAAACATCACGCATGAATGGGCCGCTGATTTAGAGTTTGTTCATATGTGGGCTGGTGAATCAAATGATATTGAAGAAATTCCAGAGGGCATGTCACCTTATTGTCCGAGGTTGTCCACCTTGATTATAAATCAATTGGCCGTTCAACATATTCCAGAGAGTTTTTTCAAATGTATGAATACCCTAACAATACTCGATCTGTCATATAGTAAAAGACTAGAATGCTTGCCAAATTCTATCAGTAAGATGAAGTCTCTTGTTTCTTTAGTACTAATAGAATGTAATTCACTTAAACATGTGCCGCCATTAGGAGAATTGAAGGTATTGTCAAGATTGGTTCTTTCAAATTGTTCCATTGAAGAACTACCACAAGGTTTGGATAAGCTACAGAATTTGAAATGGCTTGATCTATCTTTCAACAAGAGTTTGAATTTTGAATTAGGGTCTTTGAATTTGACCAAAATACAATACCTTGATCTCCAAGGTACTCGTACAATGATTACTGTCGAAGATATTCAAAGAATGTCTGTGTTGGAATGTTTTGGAGGTGCTTTTAACTGCAAACATTACAACCAGTACTTGGAGAAATATCTTGGCACGCGATCTGGGCTCCAAGCATATTATCTCATATTAGGAAATGTATATGGTGAATCAAGAAGTGTTTTGCGGAATGATATTTATTTGAAAGCATTTGATCCAAATGATCCTGAAGTTATGACTATACTATTTAGAGACTGTGGTCATTTCTCCCACATACTACCTAAAGATCTTACATGTTTGAATATAGATAAAAATGATCATTGGGTTTGCTTATGTGATGCTCTCTCATGTAACACTAGTTCTTCTTTGAAGAAAATTGGAGCTTATAATTGCCAACAGCTAGAGAGGTTGTTTTGTTTATCTGATTCTTGTTCCTTTTGCACCAAGATTCACAACCTTGAAATGTTGGAACTTGAGAGTTTGGAAAGGTTAACCGTGATTGACGTTAATGCAAGACAAACTTGGTCATTGGGTGGCATATTCTCTTGTCTAAAAAGTATTTATGTTTTTGAGTGCCATTTGATAGAGAAGTTAATTACACCAAAGTTAGTTGGACAAGTTCAAAATCTGGAAATAATTTCAGTAAGGCGTTGCAATTCAATGAAAGAGATATTAGCGGTGAGCGACGACATCAGACTTCCCAAGCTAAAAAGATTGATATTGGATTATTTACCACAATTGAAGATTAAAAAGAAGAAGGGAAAAGGATCCAAATCTGATTATGCCGCGCCTCATCTCACAATCCAGGTACCTTCTACAAATGGGTCTTCGGAGCAGAATTTGTTGGGAGAAGCTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTAGTGGACAAGGGGAGCGTGAGTTCAGAGCTGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGATTTCTTTGGTTGGTTACTGTATATCTGTGCATCAAAGATTGCTCGTCTATGACTTTGCTCTGGTTTCAGATTTCGGGCTTGCGAAATTAGCATTGGATTGGCCTTGGAACGTTCGAGACGACCCTTTATAG 2565 0.3696 MGGVGKTLLATLVENEIKKKRTFNDVFWVTVSPNFTISKLQYDIAKRIGVELDEDNERIRANKLSTTLETKEKSVLILDDVWRYIDLEKVGVSTKVNGIKVILTTRLKHVCQQMDCLPSHMIKVIPLYDVDEGWELFKVKLGHYGTPATLSPEIETVARDIVDRFAGLPLGISVMARTMKGIDEIDQWKHSLNKLNKLEMGQEVIEEVFKVLKRSYDNLMEKDLRNCFLYCALLSSYEENDREETIMKLVDNGLINGNRCLQEIFDEGQTILDKLRSHSLMSGFDHSFEFNYRLMIDTACYIMKESKRNAMVKLENELTKTNITHEWAADLEFVHMWAGESNDIEEIPEGMSPYCPRLSTLIINQLAVQHIPESFFKCMNTLTILDLSYSKRLECLPNSISKMKSLVSLVLIECNSLKHVPPLGELKVLSRLVLSNCSIEELPQGLDKLQNLKWLDLSFNKSLNFELGSLNLTKIQYLDLQGTRTMITVEDIQRMSVLECFGGAFNCKHYNQYLEKYLGTRSGLQAYYLILGNVYGESRSVLRNDIYLKAFDPNDPEVMTILFRDCGHFSHILPKDLTCLNIDKNDHWVCLCDALSCNTSSSLKKIGAYNCQQLERLFCLSDSCSFCTKIHNLEMLELESLERLTVIDVNARQTWSLGGIFSCLKSIYVFECHLIEKLITPKLVGQVQNLEIISVRRCNSMKEILAVSDDIRLPKLKRLILDYLPQLKIKKKKGKGSKSDYAAPHLTIQVPSTNGSSEQNLLGEAGFGCVYKGLLDGREVAVKQLKIGSGQGEREFRAEVETISRVHHRHLISLVGYCISVHQRLLVYDFALVSDFGLAKLALDWPWNVRDDPL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00580 854 Gene3D - 129 220 IPR042197 -
Vifa1g00580 854 SUPERFAMILY Protein kinase-like (PK-like) 746 831 IPR011009 -
Vifa1g00580 854 Pfam Protein tyrosine and serine/threonine kinase 760 831 IPR001245 GO:0004672|GO:0006468
Vifa1g00580 854 Gene3D Phosphorylase Kinase; domain 1 732 830 - -
Vifa1g00580 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 231 IPR027417 -
Vifa1g00580 854 Coils Coil 304 324 - -
Vifa1g00580 854 Gene3D Ribonuclease Inhibitor 575 731 IPR032675 -
Vifa1g00580 854 Gene3D Ribonuclease Inhibitor 316 527 IPR032675 -
Vifa1g00580 854 PRINTS Disease resistance protein signature 447 463 - -
Vifa1g00580 854 PRINTS Disease resistance protein signature 165 179 - -
Vifa1g00580 854 PRINTS Disease resistance protein signature 68 82 - -
Vifa1g00580 854 ProSiteProfiles Protein kinase domain profile. 756 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00580 854 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1 730 - -
Vifa1g00580 854 Gene3D - 1 122 IPR027417 -
Vifa1g00580 854 Pfam NB-ARC domain 1 218 IPR002182 GO:0043531
Vifa1g00580 854 SUPERFAMILY L domain-like 340 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00580 Vifa-Chr1 98941651 98944901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00580 750 850 Trihelix Transcription Factor Family AT1G68690 64.151 1.90e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g00580 NB-ARC 2e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00580 - - mtr:25497664 831.247