Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00577 ATGGCTAGGATCCAAAGAAAACTCTTCCCAACAGAAACTACCTCAAACCAAACTTCAGATTGTTATGGCTTTTGTGATCCTTTATGTCCTTCAAATTGTTATACTAACACAAATTACTATTTCACACCCCCACCCTTTGATCATACTACACAAACACAAGTTAACCACATTGGCTCCTACTTCATCATCCTCATTTTATTATTCTCATTAATTTTTACCATCATTGTTTTCTATTTTATCAAAGTGAAATGCTATAATGAAATGTGTGGTTGGAGAATCAATAACTCGGCTCGCTCTCAAGACGTTAACAACGAAGAGCTTCTCAATGAAAATCGTGACCACAATCACGATCACAATCACCCCGTGTGGCTCATCGCTACGGTTGGTTTGCAACAATCAATTATAAATTCGATTACGGTTTGCAAGTATAGAAAAAATGAAGGGCTAATCGAAGGAACCGAGTGTTCGGTTTGTTTGAATGAATTTCATGAAGATGAAACGTTGAGACTATTGCCAAAGTGTAGCCATGCTTTTCACATTTCTTGTATTGATACTTGGTTGAGATCTCATATTAATTGTCCTCTTTGTCGAGCCAGTATTGTTTCCAACAACGTTACTCCTGAAGTAACGTTGTTGAATTCCGAGCAAGAAAATAACAACTTGGGAAGAAATCAAAATACTCAAATGGAGAGTCCAAGGACTGATCAAGAGAATGATTTAAACAACAATATTGTTATTAATGTTGCATTTGAAAACATAATTGGAGAATTAAGTGATGAATCATCTGAATCTAGAAGATATCATCAAGTTATTGAGAAAAAGATGAACAAGGTTAGTGTTTGGAAGGTTATTACTAAAAAAAGTAGCAAAACTATGCGTCGATGTTCGATTGAAGAGTGTTTGCATGTAAGGCCGGTGGCTATGAAAAGGTCTTTAAATCTACAAGGAAGGAAGAGGTTAAAAAAGAGATATGCGACTACAATTTGA 987 0.3556 MARIQRKLFPTETTSNQTSDCYGFCDPLCPSNCYTNTNYYFTPPPFDHTTQTQVNHIGSYFIILILLFSLIFTIIVFYFIKVKCYNEMCGWRINNSARSQDVNNEELLNENRDHNHDHNHPVWLIATVGLQQSIINSITVCKYRKNEGLIEGTECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHINCPLCRASIVSNNVTPEVTLLNSEQENNNLGRNQNTQMESPRTDQENDLNNNIVINVAFENIIGELSDESSESRRYHQVIEKKMNKVSVWKVITKKSSKTMRRCSIEECLHVRPVAMKRSLNLQGRKRLKKRYATTI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00577 328 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 48 203 IPR044675 -
Vifa1g00577 328 SMART ring_2 155 196 IPR001841 -
Vifa1g00577 328 Pfam Ring finger domain 154 197 IPR001841 -
Vifa1g00577 328 FunFam RING-H2 finger protein ATL54 130 203 - -
Vifa1g00577 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
Vifa1g00577 328 MobiDBLite consensus disorder prediction 214 238 - -
Vifa1g00577 328 SUPERFAMILY RING/U-box 145 203 - -
Vifa1g00577 328 CDD RING-H2_EL5-like 154 197 - -
Vifa1g00577 328 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00577 Vifa-Chr1 98916969 98917955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00577 1 206 C3H Transcription Factor Family AT1G72220 43.231 1.08e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00577 - - psat:127118731 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00577 1 98916969 98917955 Vifa1g00577 1 98916969 98917955 ECH