Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00569 ATGGAGAAACCAAAACACGAAGTAGACGAAAACCCTTCACCCGCCGCCACTATCATCCCTCAAAACAACATCGTTACCCACGAAAACCCTAACTCCATCACCGAAAACACCACCACATTCTCCGAGCTCGGACTCTCGGAATGGGCGGTGAAAACCTGCAAGGAACTCAGAATGTTAACGCCACGCCGCGTGCAGCAGTACTGCATCCCCAAGATTCTAGAAGGCCGTCATGTAATCGGAATCGACGAGACTGGTAGTGGTAAAACGGCGGCGTTTGCGCTTCCTATACTCCAGCGTCTGGCGGAGCATCCGTTTGGTGTGTTTGCCCTCGTGGTGACGCCCACTCGCGAGCTTGCGTTTCAGCTCGCGGAGCAGTTTCGTGCCCTTGGTTCCTCTATCCGACTCCGGATTGCTTTGATTGTTGGTGGTATGGATATGCTTAGACAGACTAAAGACTTGGTTGCTAGGCCTCACCTTGTTATCGCTACTCCCGGAAGGATCAATGTTTTGCTCAAGGATAATCCTGAAATTGCTCCTGTTTTCTCCAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGGGTCCTGGATGTTGGGTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAGCCGGCAAAACCTATTCTTTTCTGCAACTACAACTAGTAATTTGCAAAAGTTGCGTGAGCGTTATCAACATAAGCTATATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAACTCACTCAACAAGCTGTATTCATCCCTAAAAAGGTGAAGGATGTGTATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGAGTTCGGTCTGCCATTGTCTTTGTCTCCACTTGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTGTATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCTGGCCGCGGTTTGGATATTCCTACAGTTGATCTTGTTATTAATTATGATGTTCCAAGGATTCCACGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGGCTTGCTCTGAGCCTTGTCACCCAGAATGATGTTGATCTCGTTCGTGAAATAGAGGCCCTTACCAAAAGGCAACTTGATATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCAACAATGAAGATGATAGATGATGGGTTTGAAGAGAAAGCAAAAGAGAGGAAAAAACAGAAACTGAAAATGTTAGAAGAAAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTTTCAAAGAAACATGAAAAAGTGGAACTGGATGCATCAGCAGATATAGCATCACTAAAGAAAAGGAGCAAAAATGAAAGGCAAGAGAAAAATGGAGGTATATTTTGA 1518 0.4302 MEKPKHEVDENPSPAATIIPQNNIVTHENPNSITENTTTFSELGLSEWAVKTCKELRMLTPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIALIVGGMDMLRQTKDLVARPHLVIATPGRINVLLKDNPEIAPVFSRTKFLVLDEADRVLDVGFQEELKFIFQCLPESRQNLFFSATTTSNLQKLRERYQHKLYAFEAYEGFKTVEKLTQQAVFIPKKVKDVYLLHILSKMKDMGVRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRIPRDYIHRVGRTARAGRGGLALSLVTQNDVDLVREIEALTKRQLDMIEYKENEVLSLMKKVFSAKNVATMKMIDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFSKKHEKVELDASADIASLKKRSKNERQEKNGGIF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00569 505 Gene3D - 249 501 IPR027417 -
Vifa1g00569 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 242 IPR014001 -
Vifa1g00569 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 38 66 IPR014014 GO:0003724
Vifa1g00569 505 Pfam Helicase conserved C-terminal domain 270 377 IPR001650 -
Vifa1g00569 505 MobiDBLite consensus disorder prediction 453 505 - -
Vifa1g00569 505 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 35 499 - -
Vifa1g00569 505 MobiDBLite consensus disorder prediction 472 499 - -
Vifa1g00569 505 CDD SF2_C_DEAD 254 386 - -
Vifa1g00569 505 SMART helicmild6 296 377 IPR001650 -
Vifa1g00569 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 397 IPR027417 -
Vifa1g00569 505 CDD DEADc_DDX49 40 243 - -
Vifa1g00569 505 SMART ultradead3 57 257 IPR014001 -
Vifa1g00569 505 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 188 196 IPR000629 -
Vifa1g00569 505 Gene3D - 5 242 IPR027417 -
Vifa1g00569 505 Pfam DEAD/DEAH box helicase 63 231 IPR011545 GO:0003676|GO:0005524
Vifa1g00569 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 416 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00569 Vifa-Chr1 98241810 98245267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00569 35 406 Eukaryotic Initiation Factors Gene Family AT3G19760 29.679 2.40e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00569 K14778 - gmx:100798597 713.761