Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00564 ATGGAAAACTCAAAACTTCCACATCAAACCCACCCGAACAACAAGAGAATTTCCTTGAGCCCTCATGATGAAATAGATAAATCCAATACTAAGAAAATTCCAAAAACATCAAACAAAGGTCATCAGAAAAAGTACCTAGGAGTGAGACAAAGACCATCTGGAAGATGGATAGCTGAGATAAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACTTTTGACACACCAGAAGATGCTGCTATGTCTTATGACTCAGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACTAATTTCCCAAATACTCGTGAACAAGATTTCGCCATTTTAGGAAAGAATCCTCGAACTCTTCGCCTTCTTAAGCATGCAATGATGAAAAACCATGCAGTTTCATCATCTACTTCTCTCTATTCTACTGTCATGATGCCATGGAAAAATGACGCCATTGTCGAGGAAACTATAGTTTGTTCTATTGCTGATGATGAAGGTTCTAGTGGATTTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGTGCTTCTTAA 567 0.3792 MENSKLPHQTHPNNKRISLSPHDEIDKSNTKKIPKTSNKGHQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDTPEDAAMSYDSAARLLRGRNAKTNFPNTREQDFAILGKNPRTLRLLKHAMMKNHAVSSSTSLYSTVMMPWKNDAIVEETIVCSIADDEGSSGFSFGSSKVYSSVVVAPSFSAS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00564 188 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vifa1g00564 188 MobiDBLite consensus disorder prediction 17 33 - -
Vifa1g00564 188 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 MobiDBLite consensus disorder prediction 1 43 - -
Vifa1g00564 188 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Vifa1g00564 188 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g00564 188 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 FunFam ethylene-responsive transcription factor RAP2-11 43 102 - -
Vifa1g00564 188 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vifa1g00564 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00564 Vifa-Chr1 96964095 96964661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00564 27 102 AP2-EREBP Transcription Factor Family AT5G19790 57.895 2.20e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g00564 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00564 - K09286 pvu:PHAVU_003G180000g 201.445