Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00563 ATGGCTCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGCTATATAAAAGCATACTCACGGAGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAATCACTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAGAAACACTGTGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGCATCAACTCTGTTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAGCTCATCATCAAACCAAGGGTAATGAGCGGAAAATTCCTGCTAAAGAATCACTCATAATGGATGAGATCAATACTAAGGATACAAAATCTGGAAGCAGGACTCAAGGACAAGTGGACAATGGTTCTAAGGAAGGTCATGGTGCAACCAACAGCTTGGAGCAGAGAAATCACAAAACTAGAAAGCCAAAAATTAAAGCATCTGTTGAGCAGCTTACTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACGCCGCCACTTTCGGTTCCAATCTCACTCCATTTTCATTGCAACCACTCTCCTCCCTTTCTCGTTTATCTTCTGTTCTACTGCAATCCATGGCCAATCGCTGGGTCAGGCCTGAGGGTGAACAAGCAAAGCCGAGCTGCAGGAGTGTTGGAGAACTTTTTAGAGGGAGAGAAGTATACAGAACATTTGTTGAGGAAGTTTTCACGCAACAGTTCACTTGAGATTATGCCTGGCATCAACGGCTTCTTTACTGACCCAAGTCGCAATTAA 891 0.4276 MAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKTSKALRNTVQKMGKSEAKVNGSSSINSVSHGTQKSGPAEAHHQTKGNERKIPAKESLIMDEINTKDTKSGSRTQGQVDNGSKEGHGATNSLEQRNHKTRKPKIKASVEQLTSRAASLAMAEAAKNITPPLSVPISLHFHCNHSPPFLVYLLFYCNPWPIAGSGLRVNKQSRAAGVLENFLEGEKYTEHLLRKFSRNSSLEIMPGINGFFTDPSRN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00563 296 SUPERFAMILY TPR-like 2 72 IPR011990 GO:0005515
Vifa1g00563 296 MobiDBLite consensus disorder prediction 170 184 - -
Vifa1g00563 296 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Vifa1g00563 296 MobiDBLite consensus disorder prediction 122 148 - -
Vifa1g00563 296 MobiDBLite consensus disorder prediction 91 121 - -
Vifa1g00563 296 MobiDBLite consensus disorder prediction 91 184 - -
Vifa1g00563 296 MobiDBLite consensus disorder prediction 149 169 - -
Vifa1g00563 296 PANTHER OS05G0129900 PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00563 Vifa-Chr1 96883090 96884069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00563 4 64 Calmodulin-binding Proteins AT3G25230 39.344 6.45e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00563 K23002 K21842 gmx:100787266 291.197