Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00561 ATGGCAATGGAGATCACTGCTATGGCTTCACCAACAACAAGACCCTCTCTTCTAACTCCTTCCACCTTCACCAAGCCTCAACATAGACGCCTCCACAATATATCGTTACCAACATCAACCACCATTTCACTACTCGCTCTTTTCACCCCTCCAAATGAAGCTAGAGCTGCTGTTACAATCTCCAAGGACCAAATTGTTTCTTCTATCACCCAAGTGGAGCAGACTATTGATCGGGTTCAGGTGCAGGCTGGTCAAGAGGCTCTGAAAATTGCTTCACCGGCTTTCTCTGAGGCTTCCAGGAAGGCTCAAGAAGCACTTCAAAGTTCTGGTGTTGATACCCAACCTGTTCTCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAAGTGATTGAAGGTGCCAAGCCAATAGCCTCATCAACCTTGGACACTATAACTTCTTCAGATCCCACTGTGATTGCTGGAACAGCTGGAGCACTATTTGTTGCATATCTCTTGTTTCCTCCTATCTGGTCTGTCATCTCCTCCAACCTTCGCGGTTACAAAGGAGACTTGACGCCAGCTCAAACACTAGATATGTTATGTACACAAAACTACATCTTGATTGATGTAAGGACGGAGAAAGATAAGGACAAGGCCGGTATTCCCCGCCTTCCGTCTAGTGCTAAAAACAAGATGGTTGCCATTCCATTGGAAGACATGCCAAGCAAGATAAAAGGACTAGTGAGGAATGTGAAGAGAGTGGAAGCTGAAATAGCAGCATTAAAGATTTCATATCTAAAGAAAATCAACAAAGGCTCCAACATTGTGATCTTGGACTCGTACTCAGACTCAGCAAAGATAGTTGCAAGAACGCTAACGAGGCTTGGATTTAAGAACTCATGGACCGTTGGTGATGGATTTTCTGGAGGCAAAGGGTGGTTACAGAGTAGATTAGGTGTTAAAAGTTTTGGAACAACCAACAGGCAATCTAGTCAGAAACTTCTTCCAGGAGCTGACTGA 1011 0.4481 MAMEITAMASPTTRPSLLTPSTFTKPQHRRLHNISLPTSTTISLLALFTPPNEARAAVTISKDQIVSSITQVEQTIDRVQVQAGQEALKIASPAFSEASRKAQEALQSSGVDTQPVLTAAKTVADAAQQTTKVIEGAKPIASSTLDTITSSDPTVIAGTAGALFVAYLLFPPIWSVISSNLRGYKGDLTPAQTLDMLCTQNYILIDVRTEKDKDKAGIPRLPSSAKNKMVAIPLEDMPSKIKGLVRNVKRVEAEIAALKISYLKKINKGSNIVILDSYSDSAKIVARTLTRLGFKNSWTVGDGFSGGKGWLQSRLGVKSFGTTNRQSSQKLLPGAD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00561 336 ProSiteProfiles Rhodanese domain profile. 198 319 IPR001763 -
Vifa1g00561 336 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 164 306 IPR036873 -
Vifa1g00561 336 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g00561 336 CDD RHOD 192 306 - -
Vifa1g00561 336 Gene3D - 185 326 IPR036873 -
Vifa1g00561 336 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 53 319 IPR044690 GO:0009704|GO:0071277|GO:0090333
Vifa1g00561 336 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00561 Vifa-Chr1 96792184 96794823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00561 7 277 Sulfurtransferasese or Rhodanese AT5G23060 62.460 2.38e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00561 - - gmx:100813363 483.026