Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00560 ATGGAGCGCTATGAGGTTGTCAAGGAAATTGGGTCTGGGAATTTTGCTGTGGCGAAGTTGGTTAGAGATGTTTTCACTAAAGAGCTTTTTGCTGTTAAGTTTATTGAAAGAGGACAAAATATTGATGAACATGTTCAGAGAGAAATCATGAATCATAGATCGTTGAAGCATTCTAATATCGTTAGATTCAAAGAGGTTTTGCTAACACCAACACATCTAGCTATAGTAATGGAGTATGCTGCAGGAGGAGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGGTTTTTCTTTCAGCAATTGATATCTGGAGTCAGTTACTGTCATTCAATGCAAATCTGCCATAGAGATTTGAAGCTTGAAAACACCCTCTTAGATGGAAGCTCCGCACCACGAGTCAAAATTTGTGACTTTGGTTACTCAAAGTCATCTGTGTTGCATTCCCAACCGAAGTCTACGGTGGGAACTCCAGCTTACATTGCACCCGAGGTCCTGACAAAGAAAGAATACGATGGAAAGGTTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGTTAGTCGGCGCGTATCCTTTTGAGGACCCCGAGGATCCAAAAAACTTTAAGAAAACAATTAGTAAGATACTTAGTGTCCAGTACAAAGTTCCTGATTTTGTTCGAGTTTCATTGGGATGTATACACCTTCTTTCTCAAATATTCGTCGCTGATCCTGAAAAGAGAATTACAATACCAGAAATCAAAAAGCATCCATGGTTTTTGATGAACTTACCAATAGAATTAATGGAAGGTGGAAGCTGGCAAACCAATGATGTAAATAATCCATCACAAAGTGTTGATGAAGTTCTATCCATCATACAAGAGGCAAGAAAACCTCTTAACATCCCCAAACTTGGAGGCCTTCTTAGTGGAGACAGTATGGAGTTGGATGATTATGATGCTGATATCGAAGATATAGAAACGTTCGATGATTTTGTCAGCCCTCCTCTTTAA 1014 0.3945 MERYEVVKEIGSGNFAVAKLVRDVFTKELFAVKFIERGQNIDEHVQREIMNHRSLKHSNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSSAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFKKTISKILSVQYKVPDFVRVSLGCIHLLSQIFVADPEKRITIPEIKKHPWFLMNLPIELMEGGSWQTNDVNNPSQSVDEVLSIIQEARKPLNIPKLGGLLSGDSMELDDYDADIEDIETFDDFVSPPL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00560 337 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vifa1g00560 337 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00560 337 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00560 337 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vifa1g00560 337 SUPERFAMILY Protein kinase-like (PK-like) 1 268 IPR011009 -
Vifa1g00560 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vifa1g00560 337 PANTHER SERINE/THREONINE KINASE 2 277 - -
Vifa1g00560 337 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00560 337 CDD STKc_SnRK2 3 259 - -
Vifa1g00560 337 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vifa1g00560 337 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00560 Vifa-Chr1 96506039 96508442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00560 3 279 CBL-interacting serine-threonine protein kinases AT4G24400 42.657 1.87e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa1g00560 Pkinase 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00560 K14498 - gmx:100798091 601.282