Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00551 ATGCCATTCTCTGCCATTCTCTTCATCATCTTCCTCTCCATCTTTGATATTTCACTTTGTGGGGATCGAGATAAACCTGCTCTAATAACTTACCCAGATGTGGCTCTCAATTATGTGTCTTGTTTTCAGGGTCTGTTGTTTTGTCCAGAAGCAGCTTCTTTGATGCTTCGTAACTTCTGTATTTATCACATTGATGCTCCAGGGCATGAGTTGGGAGCTGATGTGATTTCTTCGGATGAACCATTGCTTTGTGTGGATGACCTAGCTGATCAGGTTGCAGAAGTGCTTGATTTTTTCGGGCTAAGAGAGGTTATGTGCATGGGTGTAACAGCTGGTGCTTACATCCTCACACTATTTGCTATGAAATACAAAGAACGAGTGCTTAGATTGATTCTTGTTTCACCGATTTGTAAAGGACCTTCATGGACTGAATGGATTTACAACAAGGTCTTGATGAACTTATTGTACTTCTATGGTATGTGCGGTTTACTGAAGGAATGCCTCCTGCAACGTTACTTCAGTAAGGAGCTTAGATGCAGTATTGAGGGATCAGAATCAGAAGTAATACTAACTTGCCGAAGAGTACATTCTCTTTTCTGTTTTGTATGCGTAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCATAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1242 0.3897 MPFSAILFIIFLSIFDISLCGDRDKPALITYPDVALNYVSCFQGLLFCPEAASLMLRNFCIYHIDAPGHELGADVISSDEPLLCVDDLADQVAEVLDFFGLREVMCMGVTAGAYILTLFAMKYKERVLRLILVSPICKGPSWTEWIYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSIEGSESEVILTCRRVHSLFCFVCVKFIMLNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00551 413 SUPERFAMILY alpha/beta-Hydrolases 52 179 IPR029058 -
Vifa1g00551 413 Pfam Cytochrome P450 208 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 204 409 - -
Vifa1g00551 413 Gene3D Cytochrome P450 203 412 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 SUPERFAMILY Cytochrome P450 199 406 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 346 355 IPR017972 GO:0005506|GO:0016705
Vifa1g00551 413 Pfam Ndr family 17 194 IPR004142 -
Vifa1g00551 413 PRINTS E-class P450 group I signature 353 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS E-class P450 group I signature 307 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS E-class P450 group I signature 203 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS E-class P450 group I signature 343 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS E-class P450 group I signature 223 249 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS E-class P450 group I signature 266 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS P450 superfamily signature 344 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS P450 superfamily signature 267 278 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 PRINTS P450 superfamily signature 214 231 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00551 413 FunFam Geraniol 8-hydroxylase 202 406 - -
Vifa1g00551 413 Gene3D alpha/beta hydrolase 13 200 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00551 Vifa-Chr1 93255269 93257538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00551 204 409 Cytochrome P450 AT2G45550 55.825 5.69e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00551 K18266 - gmx:100803300 343.969