Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00550 ATGCCATTCTCTGCCATTCTCTTCATCATCTTCCTCTCCATCTTTGATATTTCACTTTGTGGGGATCGAGATAAACCTGCTCTAATAACTTACCCAGATGTGGCTCTCAATTATGTGTCTTGTTTTCAGGGTCTGTTGTTTTGTCCAGAAGCAGCTTCTTTGATGCTTCGTAACTTCTGTATTTATCACATTGATGCTCCAGGGCATGAGTTGGGAGCTGATGTGATTTCTTCGGATGAACCATTGCTTTGTGTGGATGACCTAGCTGATCAGGTTGCAGAAGTGCTTGATTTTTTCGGGCTAAGAGAGGTTATGTGCATGGGTGTAACAGCTGGTGCTTACATCCTCACACTATTTGCTATGAAATACAAAGAACGAGTGCTTAGATTGATTCTTGTTTCACCGATTTGTAAAGGACCTTCATGGACTGAATGGATTTACAACAAGGTCTTGATGAACTTATTGTACTTCTATGGTATGTGCGGTTTACTGAAGGAATGCCTCCTGCAACGTTACTTCAGTAAGGAGCTTAGATGCAGTATTGAGGGATCAGAATCAGAAGTAATACTAACTTGCCGAAGAAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCATAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1197 0.3935 MPFSAILFIIFLSIFDISLCGDRDKPALITYPDVALNYVSCFQGLLFCPEAASLMLRNFCIYHIDAPGHELGADVISSDEPLLCVDDLADQVAEVLDFFGLREVMCMGVTAGAYILTLFAMKYKERVLRLILVSPICKGPSWTEWIYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSIEGSESEVILTCRRNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00550 398 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 188 394 - -
Vifa1g00550 398 Pfam Cytochrome P450 185 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 Gene3D Cytochrome P450 169 397 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS P450 superfamily signature 329 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS P450 superfamily signature 199 216 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS P450 superfamily signature 252 263 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 SUPERFAMILY alpha/beta-Hydrolases 52 186 IPR029058 -
Vifa1g00550 398 Gene3D alpha/beta hydrolase 40 168 IPR029058 -
Vifa1g00550 398 Pfam Ndr family 17 196 IPR004142 -
Vifa1g00550 398 SUPERFAMILY Cytochrome P450 186 391 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 FunFam Geraniol 8-hydroxylase 173 391 - -
Vifa1g00550 398 PRINTS E-class P450 group I signature 208 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS E-class P450 group I signature 251 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS E-class P450 group I signature 188 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS E-class P450 group I signature 292 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS E-class P450 group I signature 328 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 PRINTS E-class P450 group I signature 338 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00550 398 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 331 340 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00550 Vifa-Chr1 93255269 93257538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00550 170 394 Cytochrome P450 AT2G45570 52.838 4.20e-84 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00550 K18266 - gmx:100803300 343.584