Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00548 ATGACAGGTTTTGGTCAAACAACGCCGTCAATGTCAACACCAGTCCAATATGTGCAACCTGCTCAGTCAAGTGGTGCCTTTTCCTTTAGCAACTTTGGCCAGACGCAACCTGCTGGTGCAAGTAGCTTTGGTGGAACTTCAGGCATGTTTGGTCAGAATAATTTTGGACTTCAGATGTCAATTGGCCGAGTTGGAACTACTCCTTCTGTTCAATACGGAATCTCTAGCATGCCGGCCCAAGACAAACCGGCTACCCCTCCTATTTCGACGAACCCGCAACGACACGTCGAACCACCACTCACAACCTTTGAGTACTGCAAATTTAAGTGTTCCTGGAAATGTTGCCGGAAATGTTGCTTCGTCTTCACGGACTGCTCCAAATCCAGCCCGGCTTTGAATCCATCATCTGTCTCTGCATGGGTTTCTCGTCCTAATCCTCAGCAGTATCCTCGCAGGTTATATGAATATGTTCGCCGGTCCTTGTTTACTCCTGGTGCTGAAGGTGGAAGTTCAAGCAATAACTATTCTACTTTGCGTGGTCCTTCTACTTCATCAGAATCAAGACGACCACCGTCGGCGACGAACCCTGGATCATCTCCATGGTTGGAGCGGTCAGCTGATAGCGAATTTGGAATTCCCTATTCCTTACGATCTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGCGTTGGGCCTTATGCGTAGGGGTGGGAACCTGCGGTTTGAGGATGTTATGATTCTTGACCATTCAATGTTTTCTGGAATAGCTGATATTCATGATCGACATAGGGATATGTGGCTTGATGTCGATAGCATGTCTTATGAGGAGTTACTGGCTCTTGAAGAACGCATTGGAAACGTTAGTACAGGATTGAACGAGTCTAGTTCTGTTTTCGGTCAGAATACCTCTCCCTTTGGGCAGCCTGGCGGGTTTAGTCAATCAAGCTTGTTCAGCTCACCTTCGTCTGGGCTTGTTGGAAGCATTTTCTCAAACAGCGCACCACTGACGTCGAATGCTATGACAGGTTTTGGTCAAACAACGCCGTCAATGTCAACACCAGTCCAATATGCGCAACCTGCTCAGTCAAGTGGTGCCTTTTCCTTTAGCAACTTTGGCCAGACGCAACCTGCTGGTGCAAGTAGCTTTGGTGGAACTTCAGGCATATGTCAATTGGCCGAGTTGGAACTACTCCTTCTGTTCAATACGGAATCTCTAGCATGCCGGCCCAAGACAAACCGGCTACCCCTCCTATTTCGACGAACCCGCAACGACACGTCGAACCACCACTCACAGTCGCGGATCCGTGCACGACTACCGCAAACTTCCGCTAGCATTTCCTCCGCGCTCCCTTCATCAACCCTTCCATACTTCCCTGCTTCCTCAAAGCCATCCGCATCTAAGTCATGTTCTTGCTTTACCAAGGAGTTCGCAATCCGTCAGACCTTTGAGTACTGCAAATTTAAGTGTTCCTGGAAATGTTGCCGGAAATGTTGCTTCGTCTTCACGGACTGCTCCAAATCCAGCCCGGCTTTGAATCCATCATCTGTCTCTGCATGGGTTTCTCGTCCTAATCCTCAGCAGTATCCTCGCAGGTTATATGAATATGTTCGCCGGTCCTTGTTTACTCCTGGTGCTGAAGGTGGAAGTTCAAGCAATAACTATTCTACTTTGCGTGGTCCTTCTACTTCATCAGAATCAAGACGACCACCGTCGGCGACGAACCCTGGATCATCTCCATGGTTGGAGCGGTCAGCTGATAGCGAATTTGGAATTCCCTATTCCTTACGATCTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGCGTTGGGCCTTATGCGTAGGGGTGGGAACCTGCGGTTTGAGGATGTTATGATTCTTGACCATTCAATGTTTTCTGGAATAGCTGATATTCATGATCGACATAGGGATATGTGGCTTGATGTCGATAGCATGTCTTATGAGGAGTTACTGGCTCTTGAAGAACGCATTGGAAACGTTAGTACAGGATTGAACGAGGTAACCCATCTTCCTTTCCCTCTTCTTAACACATGTATTTCTTGCCATGTTATGTGTTTTCTTAATTAG 2127 0.4791 MTGFGQTTPSMSTPVQYVQPAQSSGAFSFSNFGQTQPAGASSFGGTSGMFGQNNFGLQMSIGRVGTTPSVQYGISSMPAQDKPATPPISTNPQRHVEPPLTTFEYCKFKCSWKCCRKCCFVFTDCSKSSPALNPSSVSAWVSRPNPQQYPRRLYEYVRRSLFTPGAEGGSSSNNYSTLRGPSTSSESRRPPSATNPGSSPWLERSADSEFGIPYSLRSLAAAGEGSSRLVSELRNALGLMRRGGNLRFEDVMILDHSMFSGIADIHDRHRDMWLDVDSMSYEELLALEERIGNVSTGLNESSSVFGQNTSPFGQPGGFSQSSLFSSPSSGLVGSIFSNSAPLTSNAMTGFGQTTPSMSTPVQYAQPAQSSGAFSFSNFGQTQPAGASSFGGTSGICQLAELELLLLFNTESLACRPKTNRLPLLFRRTRNDTSNHHSQSRIRARLPQTSASISSALPSSTLPYFPASSKPSASKSCSCFTKEFAIRQTFEYCKFKCSWKCCRKCCFVFTDCSKSSPALNPSSVSAWVSRPNPQQYPRRLYEYVRRSLFTPGAEGGSSSNNYSTLRGPSTSSESRRPPSATNPGSSPWLERSADSEFGIPYSLRSLAAAGEGSSRLVSELRNALGLMRRGGNLRFEDVMILDHSMFSGIADIHDRHRDMWLDVDSMSYEELLALEERIGNVSTGLNEVTHLPFPLLNTCISCHVMCFLN 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00548 708 MobiDBLite consensus disorder prediction 72 93 - -
Vifa1g00548 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 156 686 IPR045191 GO:0061630
Vifa1g00548 708 MobiDBLite consensus disorder prediction 551 589 - -
Vifa1g00548 708 MobiDBLite consensus disorder prediction 165 203 - -
Vifa1g00548 708 MobiDBLite consensus disorder prediction 165 202 - -
Vifa1g00548 708 MobiDBLite consensus disorder prediction 551 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00548 Vifa-Chr1 93240876 93252149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00548 603 686 C3H Transcription Factor Family AT2G15530 63.095 1.01e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00548 - - psat:127091144 318.161