Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00520 ATGGCTTATCCACATTACCGATCACAGTTCGGAGACACAACATTCACTAAGGTTTTTGTCGGAGGACTAGCTTGGGAAACTCCAACCGACGAAATGCGGACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGTGATCCCGAATCTGCAAGAAGAGCTTGTGCTGATCCAAATCCAGTAATTGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGGAGAGGCAGTACATATCAGGGTGGGGGAGTAGGAGTAGGGACAGGAGGGGCAGCGGCAGCAGTTGGATACGGTGGTGTTCCGGCGGGAGGGGCGGCACAAATGGCAGGAGGAGCAGCAGCAACACCAGTAATGTATCAACCATATGGCTACCCCACCTACGCTCCTGAATATGGGTACCATCAAGCCACAATGTATAACCCTCAAATTCAGCAAGCACAATATTATCAACAAGTGTATGGACCATCATCTTCAACTATGGCCTCACCATATTATTATGGCTATTCTATGCAACCAGCTGCACCAAGGGGTACATTTTCTACCCCTCAACCACATCGCATACCAGCTGGACCATCCTATCTATACTATCCTACTACACCGATCGAAGGCGCTTCCTTCTCTCCCGCATATCGTCCATTTCAACAGCAACCCGTAATAAGGCACCCGTCTCCTTCCCCTTCTCCGACCGATTCACAGACTCAGCAACGTACCTCATCGGAGACACCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACTAA 867 0.4683 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGSTYQGGGVGVGTGGAAAAVGYGGVPAGGAAQMAGGAAATPVMYQPYGYPTYAPEYGYHQATMYNPQIQQAQYYQQVYGPSSSTMASPYYYGYSMQPAAPRGTFSTPQPHRIPAGPSYLYYPTTPIEGASFSPAYRPFQQQPVIRHPSPSPSPTDSQTQQRTSSETPSGVVITSESSNTQGKNN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00520 288 PANTHER BOULE-RELATED 6 268 - -
Vifa1g00520 288 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Vifa1g00520 288 Gene3D - 3 113 IPR012677 -
Vifa1g00520 288 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vifa1g00520 288 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Vifa1g00520 288 MobiDBLite consensus disorder prediction 235 288 - -
Vifa1g00520 288 MobiDBLite consensus disorder prediction 254 288 - -
Vifa1g00520 288 CDD RRM_RBM24_RBM38_like 16 91 - -
Vifa1g00520 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vifa1g00520 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00520 Vifa-Chr1 87095521 87098683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00520 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.67e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00520 1 87095521 87098683 Vifa1g00520 1 87095521 87098683 ECH