Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00519 ATGCTGTCATTGGATAAGAATTTTCCGGTTTGGCAACCTGCATTAGAGATGCTTGTTAATGAGTCAGTGGGGAAGGTCTTGCCGATTGCGTTGAAAGAGAGGGTTGATTCTGAGGAGCTGGCCGTTACGACTCTTGTTAGTGGTAATTTGGAGGAACTGAATGTATGCGAGACTACGAGTGAGGGGAAAATGAGTAATTTTTTTGATGTGCATGTGCATATTGATACTTATGTTCCGCCTCGGTTTGGTATCCGGGGAAATGGTGCACATTTGGCTTTGGGGGGCTATGGGAGGAACTTTGCAGCTGCAAAATATTCAGATTGGGTAAGGATTAGGAAGACTCTGGAAAAGCTCAGACCTCCATCAGTGACAGAGTTGTTGTTGTCTCATAATGGTGATCAAATACTCGAAGGTTGTGTGACAAATTTTTTCGTTGTTTGCTGTAAGGTACAAGAAGAAGCGCAAAATGGACAAGTAGAATTGGAAAAACATGTCATCACAAAGACATTGACTAAGCCATCTGAGGCATATTATGATGCCAAAAACCTGCCACATGTTCTTGTGAGTACAAAAATATGTTTTGTGTGA 588 0.4201 MLSLDKNFPVWQPALEMLVNESVGKVLPIALKERVDSEELAVTTLVSGNLEELNVCETTSEGKMSNFFDVHVHIDTYVPPRFGIRGNGAHLALGGYGRNFAAAKYSDWVRIRKTLEKLRPPSVTELLLSHNGDQILEGCVTNFFVVCCKVQEEAQNGQVELEKHVITKTLTKPSEAYYDAKNLPHVLVSTKICFV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00519 195 Pfam DNA polymerase family B 124 192 IPR006134 GO:0000166|GO:0003677
Vifa1g00519 195 Gene3D - 106 193 IPR042087 -
Vifa1g00519 195 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 7 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00519 Vifa-Chr1 86576278 86577889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00519 107 192 Core DNA Replication Machinery Family AT5G67100 38.372 7.34e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00519 - - gmx:100800620 238.424