Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00508 ATGTATGCTAAATGTAATTCGTTTGAATATGCTATACAATTGTTTGATGAAATGCCTAATAAGGATATGGCGTGCTGGAATACGGTGATTTCTTGTTATCATCAAAGCGGGAAATTTGAAGAAGCTCTGAGATACTTTGGCATGATGAGAAGATATGGGCCGGATTCAGTTACAATCACAACTGCTATTTCCTCTGAGACAAGTTCTCTTGTGACACTTTATTCCACGTGCTCCTTTTTCGGTCGGCTTCTTGCAGCAGCCTTGGTACCAACACCAATTGCATTTATTTTACTAGCCATATCTCGTACTAAAACGACATTACAATTAAGCACAAGCTTAATTGGATTAAGTTCTGGCTTTGTGTTTTCTGCGGCAGTATCTATAATATCGGAGCTATTTGGTCCAAACAGTGTTGGTGTGAACCACAACATCCTCATCACAAACATTCCTTTAGGTTCATGTCTTTATGGCCTTCTTGAAGCATTGATTTATGACTCTAAGGCCACAAGTTCAGGACAATCGATATGGCTGCGCGAGATGTCTTTGTGCATGGGAAGGAAATGCTATATGCAGACATTTATATGGTGGGGTTGCATTTCAATTGTTGGATTGGTTTCAAGAGTTCACAGTGTAGCACCTGCTGTTGAATTACTCAAGAAGCTTCTTTTTTCGTCCGATGAAGCTGTTCAGACTGCTAGCAGTTTGGCCATATCTTCGAGATTGCTCCAGGTCCCTTTTCCAAAGCAGACATTGTTAGCTCCAGATGATGGTGTTGAGAGTGTAGTTCCAGTTTCAGGCTCAGCTGATACAAGTGCTAGAAATAACCAAGTCATGGTTGAAGAAGACACTATCATTTCATCTGTTCAATATTGTTGTGATGGTTGTTCTACTGTACCTATACTCAGGAGAAGGTGGCATTGCACTATTTGTCCTGATTTTGATTTGTGTGAGGCTTGCTTTGAAGTACTAGATACAGACCTACTTCCTCCACCACACTCTAGAGATCATCCTATGACAGCAATTCCAATTGAAGTGGACTCAGTGGGAGATGGCAATGAATTTCACTTCACACCTGATGATGTTAGTGACTCACTGCCTGTACCGGTTGATAGCAACATGCAGAGTTCTTCTCCCTCAATTCATGTCTTGGAGCCCAATGATTCTGGAGAGTTTGCTGCTGCATTGACTGATCCAGTCTCAATCTCTGCTTTAAAACGGGCAATTAATTCCTTGCTACTTTCTGAATTTCTTGAACAATTGAAAGGATGGATGGATTCAACCTCTGGAGTCCGAGCAATTCCTGTTATGCAGCTTTTCTACAGGCTCTCATTTGTTGTGGGTGGACCTTTCATAGACATCTCAAAGCCCAACAGTTTAGATTTAGAGAAACTAATCAAATGGTTTTTGGATGAGATTAATCTCAACAAACCATTTGTAGCCAGAACCCGGTCTTCAATTGGGGAAGTTGCAATCCTGGTCTTCATGTTTTTCACATTGATGCTTAGAAATTGGCATCAGACTGGTAGTGATGGTTCCATGCCAAGACACAGCGGAACTACTGATGTTCATGATAAAAATCAACTAGTGCATGTTTTCAGATCTCCTATTAACAGTGAAGGTGGACATAGTAATGCTGGACCTGGATGCGGGGCTTTGCTTACAGTACGTAGAGATTTACCTGCTGGTAATTTTTCACCTTTCTTTTCTGATTCTGAGCCAAGTGAGGGTGATGCAATTAACATACTCATGGGTATACGTGATAAATTCGAGGAACATCACAAATGCATATATACGGAAGATGCCTTAAAGGCTGCAGTTCATTTGTCAACAAGATACATAGCTGATAGGTATCTACCTAATAAAGCTATTGACCACATAGACGAAGCCGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACAACTGTTACTTACTTTCTAAAAAAAACCAGAAGTTTATTAGGGAGAAATTAGAATGGTTCAGTCCATGCTTAAAATGGTTCAGGAGAGCAAGCTAA 2028 0.4043 MYAKCNSFEYAIQLFDEMPNKDMACWNTVISCYHQSGKFEEALRYFGMMRRYGPDSVTITTAISSETSSLVTLYSTCSFFGRLLAAALVPTPIAFILLAISRTKTTLQLSTSLIGLSSGFVFSAAVSIISELFGPNSVGVNHNILITNIPLGSCLYGLLEALIYDSKATSSGQSIWLREMSLCMGRKCYMQTFIWWGCISIVGLVSRVHSVAPAVELLKKLLFSSDEAVQTASSLAISSRLLQVPFPKQTLLAPDDGVESVVPVSGSADTSARNNQVMVEEDTIISSVQYCCDGCSTVPILRRRWHCTICPDFDLCEACFEVLDTDLLPPPHSRDHPMTAIPIEVDSVGDGNEFHFTPDDVSDSLPVPVDSNMQSSSPSIHVLEPNDSGEFAAALTDPVSISALKRAINSLLLSEFLEQLKGWMDSTSGVRAIPVMQLFYRLSFVVGGPFIDISKPNSLDLEKLIKWFLDEINLNKPFVARTRSSIGEVAILVFMFFTLMLRNWHQTGSDGSMPRHSGTTDVHDKNQLVHVFRSPINSEGGHSNAGPGCGALLTVRRDLPAGNFSPFFSDSEPSEGDAINILMGIRDKFEEHHKCIYTEDALKAAVHLSTRYIADRYLPNKAIDHIDEAGSKASIEAFKMKKEHNCYLLSKKNQKFIREKLEWFSPCLKWFRRAS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00508 675 Pfam AAA lid domain 575 645 IPR041546 -
Vifa1g00508 675 Pfam Zinc finger, ZZ type 289 321 IPR000433 GO:0008270
Vifa1g00508 675 ProSiteProfiles Zinc finger ZZ-type profile. 287 346 IPR000433 GO:0008270
Vifa1g00508 675 SMART zz_5 286 329 IPR000433 GO:0008270
Vifa1g00508 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR4 184 571 IPR045189 -
Vifa1g00508 675 Gene3D Tetratricopeptide repeat domain 1 72 IPR011990 GO:0005515
Vifa1g00508 675 FunFam auxin transport protein BIG 282 346 - -
Vifa1g00508 675 Gene3D UVR domain 640 657 - -
Vifa1g00508 675 Gene3D - 577 639 - -
Vifa1g00508 675 SUPERFAMILY MFS general substrate transporter 73 208 IPR036259 -
Vifa1g00508 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Vifa1g00508 675 Pfam PPR repeat 2 21 IPR002885 -
Vifa1g00508 675 Pfam PPR repeat 25 53 IPR002885 -
Vifa1g00508 675 NCBIfam pentatricopeptide repeat 25 53 IPR002885 -
Vifa1g00508 675 ProSitePatterns Zinc finger ZZ-type signature. 292 319 IPR000433 GO:0008270
Vifa1g00508 675 Gene3D - 283 346 IPR043145 -
Vifa1g00508 675 CDD ZZ 290 341 - -
Vifa1g00508 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 645 IPR027417 -
Vifa1g00508 675 SUPERFAMILY RING/U-box 277 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00508 Vifa-Chr1 84697476 84700215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00508 59 206 Nodulin-like Gene Family AT1G31470 52.976 4.82e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00508 K10691 - gmx:100776325 602.823