Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00507 ATGATTGTGGAATCAGGAAAGTGGGTGGTGCTAATAGCAACTGTTTGGATACAAGCATTCACTGGGACAAACTTTGATTTCTCATCCTATTCATCTGAGCTGAAATCAGTTCTTGAGATAACTCAGCTTCAGCTGAATTGTCTTTCAGTGGCATCTGATATGGGGAAAGCTTTTGGGTGGTGTTCTGGTTTTTCACTCATGTATTTTCCTTTGTGGGTTGTTATGTTCATGTCTGCTTTCTTGGGGCTTCTTGGTTATGGCTTCCAGTGGCTTGTTATTCAGAGATTGATTGCTTTGCCTTACTTTCTGCAATGCATTTTCTTGCCAAGCATTGTGAATTTGAAACAATTGTCTTGTTGTACTCTCCCTACAATTTTCTCTCTTGTTGACAATAACGATGAAAACGAACTTCACAAAGAACTCATTTATAAGGAGGATAATGATGTAAGGAGTAACGAAAGTGTACAAAGCTTGATGATTGAGAAGAGTTATTGTTTTGCGAATGTGTTGGGGAAGGAAAAGATTACAATGCTTGGCGAAGAACATACAACTAAGATGTTGATTCGTAGGTGGGACTTTTGGTTATATTACATTGCTTATTTCTGTGGAGGAACAATTGGATTGGTTTATAGTAATAACTTGGGACAAATTTCTCAATCACTTGGATATAGCTCTGAGACAAGTTCTCTTGTGACACTTTATTCCACGTGCTCCTTTTTCGGTCGGCTTCTTGCAGCCGCACCCGACTTATTTAGCATGAAGACACACTTTGCAAGAACTGGATGGTTTGCAGCAGCCTTGGTACCAACACCAATTGCATTTATTTTACTAGCCATATCCGGTACTAAAACGACATTACAATTAAGCACAAGCTTAATTGGATTAAGTTCTGGCTTTGTGTTTTCTGCGGCAGTATCTATAATATCAGAGCTATTTGGTCCAAACAGTGTTGGTGTGAACCACAACATCCTCATCACAAACATTCCTTTAGGTTCATGTCTTTATGGCCTTCTTGCAGCATTGATTTATGACTCTAAGGCCACAAGTTCAGGACAATCGATATGGCTGCGCGAGATGTCTTTGTGCATGGGAAGGAAATGCTATATGCAGACATTTATATGGTGGGGTTGCATTTCAATTGTTGGATTGGTTTCAAATTCAGGAGTTCACAGTGTAGCACCTGCTGTTGAATTACTCAAGAAGCTTCTTTTTTCGTCCGATGAAGCTGTTCAGACTGCTAGCAGTTTGGCCATATCTTCGAGATTGCTCCAGGTCCCTTTTCCAAAGCAGACATTGTTAGCTCCAGATGATGGTGTTGAGAGTGTAGTTCCAGTTTCAGGCTCAGCTGACACAAGTGCTAGAAATAACCAAGTCATGGTTGAAGAAGACACTATCATTTCATCTGTTCAATATTGTTATGATGGTTGTTCTACTGTACCTATACTCAGGCGAAGGTGGCATTGCACTATTTGTCTTGATTTTGATTTGTGTGAGGCTTGCTTTGAAGTACTAGATACAGACCTACTTCCTCCACCACACTCTAGAGATCATCCTATGACAGCAATTCCAATTGAAGTGGACTCAGTGGGAGATGGCAATGAATTTCACTTCACACCTGATGATGTTAGTGACTCACTGCCTGTACCGGCTGATAGCAACATGCAGTGTTCTTCTCCCTCAATTCATGTCTTGGAGCCCAATGATTCTGGAGAGTTTGCTGCTGCATTGACTGATCCAGTCTCAATCTCTGCTTCAAAACGGGCAATTAATTCCTTGCTACTTTCTGAATTTCTTGAACAATTGAAAGGATGGATGGATTCAACCTCTGGAGTCCGAGCAATTCCTGTTATGCAGCTTTTCTACAGGCTCTCATCTGCTGTGGGTGGACCTTTCATAGACATCTCAAAGCCCAACAGTTTAGATTTAGAGAAACTAATCAAATGGTTTTTGGATGAGATTAATCTCAACAAACCATTTGTAGCCAGAACCCGGTCTTCAATTGGGGAAGTTGCAATCCTGGTCTTCATGTTTTTCACATTGATGCTTAGAAATTGGCATCAGACTGGTAGTGATGGTTCCATGCCAAGACACAGCGGAACTACTGATGTTCATGATAAAAATCAACTAGTGCATGTTTTCAGATCTCCTATTAACAGTGAAGGTGGACATAGTAATGCTAGACCTGGATGCGGGGCTTTGCTTACAGTACGTAGAGATTTACCTGCTGGTAATTTTTCACCTTTCTTTTCTGATTCTGAGCCAAGTGAGGGTGATGCAATTAACATACTCATGGGTATACGTGATAAATTCGAGGAACATCACAAATGCATATATACGGAAGATGCCTTAAAGGCTGCAGTTCATTTGTCAACAAGATACATAGCTGATAGGTATCTACCTAATAAAGCTATTGACCTCATAGACGAAGCCGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACAACTGTTACTTACTTTCTAAAAAAACCAGAAGTTTATTAGGGAGAAATTAG 2526 0.403 MIVESGKWVVLIATVWIQAFTGTNFDFSSYSSELKSVLEITQLQLNCLSVASDMGKAFGWCSGFSLMYFPLWVVMFMSAFLGLLGYGFQWLVIQRLIALPYFLQCIFLPSIVNLKQLSCCTLPTIFSLVDNNDENELHKELIYKEDNDVRSNESVQSLMIEKSYCFANVLGKEKITMLGEEHTTKMLIRRWDFWLYYIAYFCGGTIGLVYSNNLGQISQSLGYSSETSSLVTLYSTCSFFGRLLAAAPDLFSMKTHFARTGWFAAALVPTPIAFILLAISGTKTTLQLSTSLIGLSSGFVFSAAVSIISELFGPNSVGVNHNILITNIPLGSCLYGLLAALIYDSKATSSGQSIWLREMSLCMGRKCYMQTFIWWGCISIVGLVSNSGVHSVAPAVELLKKLLFSSDEAVQTASSLAISSRLLQVPFPKQTLLAPDDGVESVVPVSGSADTSARNNQVMVEEDTIISSVQYCYDGCSTVPILRRRWHCTICLDFDLCEACFEVLDTDLLPPPHSRDHPMTAIPIEVDSVGDGNEFHFTPDDVSDSLPVPADSNMQCSSPSIHVLEPNDSGEFAAALTDPVSISASKRAINSLLLSEFLEQLKGWMDSTSGVRAIPVMQLFYRLSSAVGGPFIDISKPNSLDLEKLIKWFLDEINLNKPFVARTRSSIGEVAILVFMFFTLMLRNWHQTGSDGSMPRHSGTTDVHDKNQLVHVFRSPINSEGGHSNARPGCGALLTVRRDLPAGNFSPFFSDSEPSEGDAINILMGIRDKFEEHHKCIYTEDALKAAVHLSTRYIADRYLPNKAIDLIDEAGSKASIEAFKMKKEHNCYLLSKKTRSLLGRN 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00507 841 Gene3D - 464 522 IPR043145 -
Vifa1g00507 841 Pfam Nodulin-like 7 108 IPR010658 -
Vifa1g00507 841 SUPERFAMILY MFS general substrate transporter 59 384 IPR036259 -
Vifa1g00507 841 SMART zz_5 467 510 IPR000433 GO:0008270
Vifa1g00507 841 Gene3D - 758 820 - -
Vifa1g00507 841 Pfam AAA lid domain 756 825 IPR041546 -
Vifa1g00507 841 CDD ZZ 471 522 - -
Vifa1g00507 841 Gene3D MFS general substrate transporter like domains 7 385 IPR036259 -
Vifa1g00507 841 SUPERFAMILY RING/U-box 459 531 - -
Vifa1g00507 841 ProSiteProfiles Zinc finger ZZ-type profile. 468 527 IPR000433 GO:0008270
Vifa1g00507 841 Pfam Zinc finger, ZZ type 473 502 IPR000433 GO:0008270
Vifa1g00507 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 823 IPR027417 -
Vifa1g00507 841 FunFam auxin transport protein BIG 463 527 - -
Vifa1g00507 841 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR4 363 752 IPR045189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00507 Vifa-Chr1 84660731 84664162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00507 171 386 Nodulin-like Gene Family AT1G31470 63.761 4.01e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00507 K10691 - gmx:100776325 602.823