Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00503 ATGGATCATTTTTGCTGTTTGAAGTCTTCTTTCGCTAAGCTTGTATCCACGAGATCGTCATGCAGCACGGGTAAAGGGAAAAATCCTCAAGGGTCAATAAAGTATGGTTTCACTCTAGTGAAAGGGAGAGCTAATCATCCAATGGAGGATTACCATGTCGCCAAGTTCGTGCAGTTACAAGGAAAAGAATTGGGTTTGTTTGCTATTTATGATGGCCACTTGGGCGATAGTGTTCCTTCTTACTTACAGAAACATCTATTTTCCAACATTTTAAAAGAGGATGGATTTTGGGAGGACCCTGCTGCATCTATCTCAAAAGCATATCTGAGCACAGATAAGGCAATTCTTTCACATAGTTCTGATTTGGGGCGTGGCGGTTCAACGGCTGTAACTGCAATACTAATCAATGGTCAACTGTTATGGACGGCTAATGTAGGAGATTCGCGAGCCGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACAGATCATGAGCCTAACACAGAACGTGGCATCATTGAAAATAAAGGTGGTTTTGTCTCCAACATTCCAGGTGATGTACCTAGAGTAAATGGACAACTGGCTGTTTCTCGTGCATTTGGAGACAAGAGCCTCAAGTCTCATTTGCGATCAGACCCTGATGTACAGAGTACCGATGTAGATGTTGATATTGATATTCTAATCCTTGCAAGTGATGGTCTTTGGAAGGTAATGAGTAATCAAGAGGCGGTTGATATTGCTAGAAAGATGAGAGATCCACTGAAAGCAGCTAAGAATTTAACAGCTGAAGCATTAAAAAGAGACAGTAAAGATGATATATCTTGTGTCGTGGTTAGATTTAGGAGTTGA 852 0.412 MDHFCCLKSSFAKLVSTRSSCSTGKGKNPQGSIKYGFTLVKGRANHPMEDYHVAKFVQLQGKELGLFAIYDGHLGDSVPSYLQKHLFSNILKEDGFWEDPAASISKAYLSTDKAILSHSSDLGRGGSTAVTAILINGQLLWTANVGDSRAVLSRKGQAVQLTTDHEPNTERGIIENKGGFVSNIPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQSTDVDVDIDILILASDGLWKVMSNQEAVDIARKMRDPLKAAKNLTAEALKRDSKDDISCVVVRFRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00503 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Vifa1g00503 283 FunFam Probable protein phosphatase 2C 39 25 282 - -
Vifa1g00503 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Vifa1g00503 283 SMART PP2C_4 30 279 IPR001932 -
Vifa1g00503 283 Gene3D - 30 283 IPR036457 -
Vifa1g00503 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Vifa1g00503 283 CDD PP2Cc 33 281 IPR001932 -
Vifa1g00503 283 PANTHER PROTEIN PHOSPHATASE 29 281 IPR015655 GO:0004722|GO:0006470
Vifa1g00503 283 SMART PP2C_SIG_2 45 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00503 Vifa-Chr1 83733828 83737449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00503 1 282 PP2C-type Phosphatase Gene Family AT1G22280 69.097 1.30e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00503 K17506 - gmx:100797292 468.003