Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00501 ATGGCTGATTCACTCTCAGTTAATGTTGATTCATTACATAACCTTGAGTTAGATGCTAAAGAAGTAAGAATTACCACCTATGAGGCTAAACACTTTGCATCTAGCATCCAAAAGGCTATTGCTGAATTTGTAGGTACATATATTCTTATATTTGTAGGCTGTGGAGCTGCTCTTGTCAATGAGAGGCTACCAATCACAATAGTTGGCATAGCAATTGTTTCCGGCTTAGCTTTAACCGTCGCTATATATTCGGTCGGTCATGTCTCTGGTGGTCATTTCAATCCTGCCGTCACAATCGCGTTGGCCGCTGTCCAAAAAATTCAATTCAAACTTGTGCCTGTTTATGTGGTGTGTCAGATAATGGGTGGCACACTGGCCACTCTCACTCTGAAAGTGTTGTATCATAACAAGGTGGATATTGGTGTAACATTGACCAAGTATTCAAATTCAACTTCTGATCTTGAAGCATTGCTGTGGGAATCCATAATTACATTCATATTGATGCTTACTATTTGTGGTGTTGCCACTGATCACAGAGGAAGCAAAGAACTTGCTGGAGTTGCCATAGGTATTTCAGTTCTTATTAACATCATCATTGCCGGGCCTATTACGGGAGCTTCGATGAATCCTGCAAGGAGTTTAGGCCCTGCCATAGTATCAGGAAATTACAAAAACATTTCAGTTTATATCATAGGTCCAACTATTGGAGCAATCTTTGCAAGTGTACTTTACACTTACCTAAGAGTAACAAAACCAACTCAACCAGAACTACCATAA 777 0.4003 MADSLSVNVDSLHNLELDAKEVRITTYEAKHFASSIQKAIAEFVGTYILIFVGCGAALVNERLPITIVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAAVQKIQFKLVPVYVVCQIMGGTLATLTLKVLYHNKVDIGVTLTKYSNSTSDLEALLWESIITFILMLTICGVATDHRGSKELAGVAIGISVLINIIIAGPITGASMNPARSLGPAIVSGNYKNISVYIIGPTIGAIFASVLYTYLRVTKPTQPELP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 NCBIfam MIP family channel protein 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00501 258 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Vifa1g00501 258 Gene3D Glycerol uptake facilitator protein. 6 256 IPR023271 -
Vifa1g00501 258 PANTHER AQUAPORIN NIP2-1 29 251 IPR034294 -
Vifa1g00501 258 SUPERFAMILY Aquaporin-like 33 255 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00501 Vifa-Chr1 83675245 83676728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00501 37 257 Major Intrinsic Protein MIP AT5G37820 48.000 1.12e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00501 K09874 - gmx:100798380 385.956