Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00495 ATGATGAAGCCAACAAGAGTTTTTATAGATGTTCTTTGTTTTGCATTTTTCTTGTTGTGGAGTTGTTCATTTTCAACTGCTTTGCTTTCTTCTAAAGGTGTAAACTTTGAAGTTCAAGCTTTAATGGATATAAAAGAGACTATAGTGGATCCACACGGTGTTCTTGATAATTGGGATGGTGATGCAGTTGATCCATGTAGTTGGACTATGGTTACATGTTCTGGTGAAAATCTTGTCATTGGATTGGGTACTCCGAGTCAAAGTTTATCAGGTACTCTATCTCCAAGCATAGGAAATTTAACCAACCTTCAAATTGTGCTGTTACAGAATAACAACATAACCGGGTCAATCCCTTCAGAATTAGGCAAACTTCCTAAGCTTCAAACTCTTGATCTCTCTAATAATTTCTTCATTGGTGAAATTCCTCCTTCTCTTGGACACTTGAGAAGCCTTCAATACTTGAGGTTTAATAATAACAGTCTTGTTGGAGAATGTCCAGAATCTCTAGCTAACATGACACAGCTTTCTTTTCTTGATTTATCTTACAACAATCTCAGTGGGCCTGTACCGAGAATTTTGGCGAAATCATTTAGCATTGTTGGTAATCCTCTTGTTTGTGCTACTGGAAATGAACCGAACTGTCATGGGATGACATTGATGCCAATATCCATGAACTTGAGCAATACTAATCAAGATGTTTTACCATCAAGCAAACCAAAAAGTCATAAAATGGCGATAGCCTTTGGCTTGAGTCTTGGATGTCTCTGCATGATAGTTATCGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAACCATTCTTTGACGTCAAAGACCGACATCATGAAGAAGTTTACCTTGGAAACTTGAAGAGATTTCCATTCAGAGAACTCCAAATTGCTACTCACAACTTCAGCAACAAAAACTTAGTTGGAAAAGGCGGTTTTGGAAATGTCTACAAAGGAATTCTCTCAGACGGAACTGCTGTTGCTGTCAAGAGGCTTAAAGATGGGAATGCAATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCCTTGCGGTACATAGAAATCTGCTTCGACTTTATGGATTTTGCATGACATCGTCCGAAAGGCTTTTAGTTTATCCTTACATGTGCAATGGAAGTGTTGCGTCTCGTTTGAAGGGTAAACCGGTCTTGGATTGGGGAACAAGGAAGAACATTGCTTTAGGAGCAGCGAGGGGACTACTATACCTTCATGAACAATGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCAAACATATTACTTGATAACTATTGTGAAGCTGTAGTCGGTGATTTCGGTTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACAGCAGTGAGAGGAACTGTAGGACATATTGCACCGGAATATCTATCGACCGGACAATCCTCTGAGAAAACTGATGTGTTTGGATTTGGCATTCTTCTTCTTGAGTTAATTACAGGTCAGAGAGCCTTAGAATTTGGAAAGGCTGCTAATCAAAAAGGAGCCATGCTTGATTGGGTGAAGAAAATTCATCAAGAAAAGAAACTCGAACTCCTTGTCGACAAAGATCTAAAAACCAACTACGACAAAATCGAGCTCGAAGAAATGGTTCAAGTAGCACTCTTATGCACTCAATATCTTCCAAGCCATAGACCTAAGATGTCAGAAGTTGTAAGAATGCTTGAAGGTGATGGACTAGCTGAGAGATGGGAAGCTTCACAAAGAACAACAGACACTTCCAAATGGAAACATCATGAATCATCTTTATCAGATAGATATTCTGATCTTACTGATGATTCTGTGTTATTAGTTCAAGCTATGGAGCTTTCAGGACCAAGGTGA 1890 0.3899 MMKPTRVFIDVLCFAFFLLWSCSFSTALLSSKGVNFEVQALMDIKETIVDPHGVLDNWDGDAVDPCSWTMVTCSGENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSELGKLPKLQTLDLSNNFFIGEIPPSLGHLRSLQYLRFNNNSLVGECPESLANMTQLSFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGNEPNCHGMTLMPISMNLSNTNQDVLPSSKPKSHKMAIAFGLSLGCLCMIVIGFGLVLWWRHKHNQQPFFDVKDRHHEEVYLGNLKRFPFRELQIATHNFSNKNLVGKGGFGNVYKGILSDGTAVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSSERLLVYPYMCNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDNYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKTNYDKIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAERWEASQRTTDTSKWKHHESSLSDRYSDLTDDSVLLVQAMELSGPR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00495 629 FunFam Putative LRR receptor-like serine/threonine-protein kinase 34 216 - -
Vifa1g00495 629 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Vifa1g00495 629 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
Vifa1g00495 629 ProSiteProfiles Protein kinase domain profile. 308 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00495 629 Pfam Leucine Rich repeats (2 copies) 101 142 IPR025875 -
Vifa1g00495 629 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 588 - -
Vifa1g00495 629 Gene3D Transferase(Phosphotransferase) domain 1 385 597 - -
Vifa1g00495 629 FunFam Somatic embryogenesis receptor kinase 1 277 384 - -
Vifa1g00495 629 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Vifa1g00495 629 SMART serkin_6 308 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00495 629 SUPERFAMILY L domain-like 36 205 - -
Vifa1g00495 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Vifa1g00495 629 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Vifa1g00495 629 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vifa1g00495 629 Pfam Protein kinase domain 309 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00495 629 FunFam Somatic embryogenesis receptor-like kinase 1 385 597 - -
Vifa1g00495 629 Gene3D Ribonuclease Inhibitor 34 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00495 Vifa-Chr1 82953644 82957715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00495 1 629 Receptor kinase-like Gene Family AT5G16000 77.638 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g00495 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00495 - - gmx:100798412 1094.34