Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00492 | ATGAAGTACATAACTCTAGTATACACTAAACTAAAATGGCTACTAGATTTCATAATATATTATCCTTTCTATAAGCTTCATGATTCTCATTTTCCTCCAATAATTGCAGGAGTGTACAATATATGCAATTATGAACTCACCCCTACCTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTTTGCGAAATAGAAGAAGGAGATGAGATTAGAGCATTGAGGTGTGACCATATGTATCACAGAAACTGTTTGGATAAATGGGTTAGTTTCAAAAACAATACTTGTCCACTATGTAGAGAATCATTGAGACCCAGAAAGGCCATCACTGAGCTTGGAGCTGAAGTTCTATCTTTTGATTTTTGTGCAAACCGGAAAATGCGAGATCGTGATGATTGGTGGATACGATGA | 405 | 0.3654 | MKYITLVYTKLKWLLDFIIYYPFYKLHDSHFPPIIAGVYNICNYELTPTSEEDVECSVCLCEIEEGDEIRALRCDHMYHRNCLDKWVSFKNNTCPLCRESLRPRKAITELGAEVLSFDFCANRKMRDRDDWWIR | 134 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00492 | 134 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 98 | IPR001841 | - | |
Vifa1g00492 | 134 | Pfam | Ring finger domain | 55 | 98 | IPR001841 | - | |
Vifa1g00492 | 134 | PANTHER | - | 33 | 108 | - | - | |
Vifa1g00492 | 134 | SMART | ringv_2 | 55 | 98 | IPR011016 | GO:0008270 | |
Vifa1g00492 | 134 | SUPERFAMILY | RING/U-box | 50 | 105 | - | - | |
Vifa1g00492 | 134 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 105 | IPR013083 | - | |
Vifa1g00492 | 134 | SMART | ring_2 | 56 | 97 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00492 | Vifa-Chr1 | 82091178 | 82091582 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g00492 | 51 | 101 | C3H Transcription Factor Family | AT2G04240 | 49.020 | 2.61e-13 | 61.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00492 | K16282 | - | sind:105156745 | 132.494 |