Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00492 ATGAAGTACATAACTCTAGTATACACTAAACTAAAATGGCTACTAGATTTCATAATATATTATCCTTTCTATAAGCTTCATGATTCTCATTTTCCTCCAATAATTGCAGGAGTGTACAATATATGCAATTATGAACTCACCCCTACCTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTTTGCGAAATAGAAGAAGGAGATGAGATTAGAGCATTGAGGTGTGACCATATGTATCACAGAAACTGTTTGGATAAATGGGTTAGTTTCAAAAACAATACTTGTCCACTATGTAGAGAATCATTGAGACCCAGAAAGGCCATCACTGAGCTTGGAGCTGAAGTTCTATCTTTTGATTTTTGTGCAAACCGGAAAATGCGAGATCGTGATGATTGGTGGATACGATGA 405 0.3654 MKYITLVYTKLKWLLDFIIYYPFYKLHDSHFPPIIAGVYNICNYELTPTSEEDVECSVCLCEIEEGDEIRALRCDHMYHRNCLDKWVSFKNNTCPLCRESLRPRKAITELGAEVLSFDFCANRKMRDRDDWWIR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00492 134 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Vifa1g00492 134 Pfam Ring finger domain 55 98 IPR001841 -
Vifa1g00492 134 PANTHER - 33 108 - -
Vifa1g00492 134 SMART ringv_2 55 98 IPR011016 GO:0008270
Vifa1g00492 134 SUPERFAMILY RING/U-box 50 105 - -
Vifa1g00492 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 105 IPR013083 -
Vifa1g00492 134 SMART ring_2 56 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00492 Vifa-Chr1 82091178 82091582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00492 51 101 C3H Transcription Factor Family AT2G04240 49.020 2.61e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00492 K16282 - sind:105156745 132.494