Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00490 ATGTTGGAGCAAAAATTCCTCACCACCACCTCGGCCACAGTCCGGTCCGCGGCCACATGGCCGCGAACATGTGACACGTGCCGCTTGGCGCCATGCGCGGTATTTTGCCGCGCAGACTCGGCCTACTTATGCGCTGGATGCGACTCACGCATCCACGCAGCAAATCGCGTAGCCTCGAGGCACGAACGCGTCTGGGTCTGCGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCCGACGCTGCCTCTCTTTGCTCATCCTGTGATTCCGATATCCATTCGGCTAACCCTCTTGCCAGCCGCCACCAACGCGTCCCGATTCTTCCGATTTCGGGGTACCTTTACGGTCCTCCCACGACTCTTTTAGGTGCTGACGACGAAGGCTTTCTCCGCGGAGGCGGTGAGGCCGAGGAAGAGGAGGATGAAGGTGTTGATATGGAAGATGAAAATGAAGCAGCTTCATGGCTTTTGTTGAATCCTTTGAAAAACAACAATAACAATATCAATAACAACAACAGCAACAACAACAGCAACAACAACAACGATCATAATCAAGATGGTAATAACGGATTTCTATTTAGCGGCGAAGTCGACGAGTATTTAGATCTCGTTGATTGTAATTCTTGTGGTGGTGAAAACACTTTCACTACAAATAATTCTCATCATGATCACGAGTATAGTCAACCGCAACAACAACAAGATCATTACGGTGTTCCTCAAAAGAGCTATGTTGGAGATAGTGTCGTTCCTGTTCAACAGCAACATGTACAGAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATCGTGGTGGTTCAATTAGTCAAAGCGTTTCAGTTTCATCAATGGATGTTGGAGTTGTACCAGAATCAACAATTAGAGATGCCACAACAATGTCATATTCAAGAACTCCAAAAGGAACAATTGACCTATTTTCAGCTCCTCCTATTCAAATGACTTCTCATTTCTCTCCAATGGACCGAGAAGCCCGAGTCCTAAGGTACCTCGAGAAAAAGAAAACAAGAAAATTCGAGAAAACAATCCGATACGCCTCGAGGAAAGCCTATGCGGAAACTAGACCGCGTATCAAAGGTCGGTTCGCAAAGCGGACCGACATAGAAGCTGAAGTCGATCAAATGTTTTCTACAACACTAATTACCGATGTTGGATACGGAATTGTCCCCTCTTACGTATGA 1221 0.4693 MLEQKFLTTTSATVRSAATWPRTCDTCRLAPCAVFCRADSAYLCAGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDSDIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFLRGGGEAEEEEDEGVDMEDENEAASWLLLNPLKNNNNNINNNNSNNNSNNNNDHNQDGNNGFLFSGEVDEYLDLVDCNSCGGENTFTTNNSHHDHEYSQPQQQQDHYGVPQKSYVGDSVVPVQQQHVQNFQLGLEFESSKAGFSYNRGGSISQSVSVSSMDVGVVPESTIRDATTMSYSRTPKGTIDLFSAPPIQMTSHFSPMDREARVLRYLEKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIEAEVDQMFSTTLITDVGYGIVPSYV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00490 406 ProSiteProfiles CCT domain profile. 336 378 IPR010402 GO:0005515
Vifa1g00490 406 Pfam CCT motif 336 378 IPR010402 GO:0005515
Vifa1g00490 406 CDD Bbox1_BBX-like 24 66 - -
Vifa1g00490 406 SMART bboxneu5 19 66 IPR000315 GO:0008270
Vifa1g00490 406 SMART bboxneu5 67 109 IPR000315 GO:0008270
Vifa1g00490 406 MobiDBLite consensus disorder prediction 134 151 - -
Vifa1g00490 406 MobiDBLite consensus disorder prediction 131 151 - -
Vifa1g00490 406 MobiDBLite consensus disorder prediction 163 193 - -
Vifa1g00490 406 CDD Bbox1_BBX-like 66 109 - -
Vifa1g00490 406 MobiDBLite consensus disorder prediction 219 244 - -
Vifa1g00490 406 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Vifa1g00490 406 ProSiteProfiles Zinc finger B-box type profile. 24 66 IPR000315 GO:0008270
Vifa1g00490 406 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 393 IPR045281 GO:0009909
Vifa1g00490 406 MobiDBLite consensus disorder prediction 219 240 - -
Vifa1g00490 406 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00490 Vifa-Chr1 81644561 81647267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00490 17 405 C2C2-CO-like Transcription Factor Family AT3G02380 53.015 1.19e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa1g00490 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00490 K12135 - tpra:123889374 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00490 1 81644561 81647267 Vifa1g00490 1 81644561 81647267 PCT