Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00449 ATGATATCGAATCGCGAGTCAGCGCGCCGCTCGCGAATGAGGAAACAAAAACACCTTGATGAGCTTTGGTCACAGGTTGTTTGGCTGAGAAATGAGAATCGTCAACTACTAGATAAGTTGAACAGTTTTTCGGAGTCTCGTGATAGAGTTGTTCAAGAGAATGTTCTATTGAAAGAACAAGCTTCGGAGCTTCGACAATTGGTTTGTGACATGCAGTTGCATAGTTCTTGTCTTCCTTTGAGTCCTCTTGAAGATGTCCCTAGCATCAACTCACCTCATTTTGAATCTGATTCCGCAAACCAAACAATTACAAGTTCTGTTGATTTTTTAGGATAA 336 0.4107 MISNRESARRSRMRKQKHLDELWSQVVWLRNENRQLLDKLNSFSESRDRVVQENVLLKEQASELRQLVCDMQLHSSCLPLSPLEDVPSINSPHFESDSANQTITSSVDFLG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00449 111 SMART brlzneu 1 56 IPR004827 GO:0003700|GO:0006355
Vifa1g00449 111 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 77 IPR044521 -
Vifa1g00449 111 FunFam BZIP transcription factor 1 45 - -
Vifa1g00449 111 Pfam bZIP transcription factor 1 49 IPR004827 GO:0003700|GO:0006355
Vifa1g00449 111 CDD bZIP_plant_GBF1 1 45 IPR045314 GO:0003700|GO:0006355
Vifa1g00449 111 SUPERFAMILY Leucine zipper domain 1 45 IPR046347 GO:0003700|GO:0006355
Vifa1g00449 111 Gene3D - 1 49 - -
Vifa1g00449 111 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 57 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00449 Vifa-Chr1 72056438 72056773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00449 1 78 bZIP Transcription Factor Family AT3G30530 71.250 1.30e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00449 bZIP_1 2.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00449 - - aprc:113863596 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00449 1 72056438 72056773 Vifa1g05421 1 841883754 841884314 PCT