Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00448 ATGCAAGCAAAAGAATTTAATACACAACTCAATTATTTACTCCCAAATTCCAACCCATCACCTTATCCATCATCATGCAACTACAACATGTTCCAAAACACAATCCAAACATTCTCCAACCAACTCTATGGTTTCAACCAAAACCCTATTCTTCAAGACCTGAGTCCTCAATCCTCATGCATAAGCAATAACTCAACCTCCGACGAAGCGGACGAACAAAACAAAGGCCTAATCAACGAGAGAAAGCATCGGAGAATGATATCGAATCGCGAGTCAGCGCGCCGCTCGCGAATGAGGAAACAAAAACACCTTGATGAGCTTTGGTCACAGGTTGTTTGGCTGAGAAATGAGAATCGTCAACTACTAGATAAGTTGAACAGTTTTTCGGAGTCTCGTGATAGAGTTGTTCAAGAGAATGTTCTATTGAAAGAACAAGCTTCGGAGCTTCGACAATTGGTTTGTGACATGCAGTTGCATAGTTCTTGTCTTCCTTTGAGTCCTCTTGAAGATGTCCCTAGCATCAACTCACCTCATTTTGAATCTGATTCCGCAAACCAAACAATTACAAGTTCTGTTGATTTTTTAGGATAA 591 0.4061 MQAKEFNTQLNYLLPNSNPSPYPSSCNYNMFQNTIQTFSNQLYGFNQNPILQDLSPQSSCISNNSTSDEADEQNKGLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENRQLLDKLNSFSESRDRVVQENVLLKEQASELRQLVCDMQLHSSCLPLSPLEDVPSINSPHFESDSANQTITSSVDFLG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00448 196 CDD bZIP_plant_GBF1 82 130 IPR045314 GO:0003700|GO:0006355
Vifa1g00448 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Vifa1g00448 196 Gene3D - 79 134 - -
Vifa1g00448 196 FunFam BZIP transcription factor 79 130 - -
Vifa1g00448 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Vifa1g00448 196 Pfam bZIP transcription factor 81 134 IPR004827 GO:0003700|GO:0006355
Vifa1g00448 196 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 10 162 IPR044521 -
Vifa1g00448 196 SUPERFAMILY Leucine zipper domain 81 130 IPR046347 GO:0003700|GO:0006355
Vifa1g00448 196 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00448 Vifa-Chr1 72056183 72056773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00448 11 163 bZIP Transcription Factor Family AT3G30530 60.127 9.84e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00448 bZIP_1 7.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00448 - - aprc:113863596 249.595