Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00445 ATGGCAGATCAAGTATCATCTTCCTCTTTCTTCACGTACGATGTATTCTTCAGCTTCAATCCCTTAGATACTAGCAATGGTTTCGCTGCAAATGTCTCACAAGCTTTCCAAAGAAGGGGAATTAAGGCATTTATTGAAAGCAGAGACGAAATAACACCGGTTATTTTCAATGCAATTGTAAAATCCAGATCTTCCGTTATCTTGCTCTCTAAGAACTATGCTTCGTCTTCACGTTGTTTGGAAGAACTTGCTTATATCCTTGATAGCTTTCACCATGCTACAAGTTTTGTTTTTCCGTTTTTCTATCACGTGGATCCTTCTGATGTGAGAGACATGAGAGGAGCTTATGGGGAAGCTTTGGCGAGGCACGAGGAGAATTTGAAGGATAACAATAAGGACAAGTTGCTGAAATGGAAGAACGCGCTGTGTCAAGTAGCTAATTTATCTGCCTTTCATCTCCAACACGGAGTTGGATGTGATGAATCTGGTTTTATTACAAAGATTGTCAAAGAGGTCTCTAGAAAGCATTATTATGCTCCTTTGGCCAATGAAGATCACCTAGTCGGATTGGACGATCCTTTGGAAGAACTGTGCTCCCTCATGGATATGAAATCTGACAGTGTCCTCAAGATAGGGATATTTGGAATGACTTGTGTTGGTAAAACAACACTCGCTCGAGCAGTTTATAATAGAATCGCACACCAATTTGAAGGTGATTGTTTTCTTGACGTGAAAGGAAACGGACTGGTGTGCCTCCAAAATAGGCTTCTTTTCGATATAGTTGGAGAAGATATTCAGATTGAAAGTGCTGATAGAGGTGCTTCATTAATAAAGTACTGGCTCCAACAAAAGAAAGTTCTTTTGATCCTTGATGATGTGGATACACTAGAGCAACTGGAGGCCTTGGTTGGAGGACAGGATTGGTTTGGTTCTGGAAGCAGAATTATCGTTACAACTAGTGACAGCCATTTGCTAGCACACCAGGGGTTTCAAATAACATACAATGTAAAGTTCTTAAATGACAAATATGCATATGACTTGTTTATTCATAATGCTTTCAGACAAGGAGAAGTCGAGCCAATGTACGCAGAAGTTTTGCACCCAATATTTGCTTATGCTGATGGGCTTCCATTAGTCTTGGAAACAGTAGGTTCCGCATTGTATGGTAAAAGTGTAGATGAATGGAGATATGCATTTTATGGGTTAAAAAGCCATACTCATAATGATATCTATAAGATACAGAGAAGAAGTTTTGATAATTTAAGCGAAGACGAGCAAACTGTTTTTCTCGATATTGCTTGTTGCTTCAATGGATATAAATTGACAGAGCTCAACAGGATACTTTGTGCTCATTATGGCCGCAAAATAAAACATCTTGTTGATGGGTTAATTGTTAAATCTCTCTTAAGTATTGGTTTGGATGGTAAGGTGAGAGTGCATGAGTTGATAGAGGATATGGGTAAAGAAATTGTTCGTCAAGAATCACCTGATCCCGGGAAACATAGTAGGCTATGGTCTCACGATGATATACTTTACATTTTAAAAACAAATAAGGGAACTGATAAAATTCAAATCATACACTTGGATCCCCCCTTAATTGGAGATGAAGCAATAGAATGGGATGGTGAGGCATTCAAGAAGATGGAAAATCTCAAAACACTTGTCATAAAAAAATGTCATTTTTCCAATGCTCCCAAACATCTTCCATCTAGTTTAAGAGTGTTGCAATGGTGGAATTATCCTTCACAAAAGTTACCATGCGATTTTGATTCAAAACAGCTTGTCATATTATGGATGTCACAAGACAAGGGCGTCGCACTAGCCCTGCTGACTGAGTTATTCATGACGTATCAAATTATTTGCAAGGTGAGAGTCGAGACTCAAATGGTGATGTTGGAGGGTCGCACTATGTTATTTTACTTTTATTATTTTCCCATTCAAAAGCTTTTGATCCTAACCAGATTGACTGACATTTCTAAAGCTTTGCAGACTTGTAAGAGGGCTGCTCGAGTTATGTTGCAGGCTTCTGTGAGGGTTTTGCACGCGGAGGTGACTTGGAGACTAGTTGGCCTTGTGTCAAGTGTAGTTGGCCTATTATGTTATGCTTTGAGCCCTTCTTTCAATCAATTAATTGGTGGCTGGAACTCTTTCAAGATTGTTCTTTACGCCATGTTTTCTTTGATTATCGGTGCCACCATATTATTTGGAAAGAAGTCTTCTCTTTCTGTACGATATGTTGAATACAAAACCTACATGAAATTTGCAGTTTTAATGATCGTCTCCGTGTACTCATTCTATTATGACAATGCTGTGGCTGGGAAACCTGAATTACTGAGTGTGGTTTCGAATGCTGCGTTAGCTTTGATGTCATTAAGCTTGTCAAGACTGGTTAAGTTGGGATTTGAGATTGGTATATTCTCTTATTTCCTAGGCTGTCTTGTGATTCAATTATGGACCATCGATGGGAAGCTGATTTTGGTAGCCATAATCTTCGGTTGTCCACTCTTTATTATGCAATCCTCTTTGGATTCTGAACCAGAAGTCTGCAATGGAAGTCAAGTTATTAATTCAGACTCCCAAACAGTGCTAACTAATGGAGGCCAAGATATTCATCCAAATTCCCAAACAGTGCTAACTAATAGAGGCCAAGATATTCATTCCTCTTCAGATGCCACACCATAG 2682 0.3904 MADQVSSSSFFTYDVFFSFNPLDTSNGFAANVSQAFQRRGIKAFIESRDEITPVIFNAIVKSRSSVILLSKNYASSSRCLEELAYILDSFHHATSFVFPFFYHVDPSDVRDMRGAYGEALARHEENLKDNNKDKLLKWKNALCQVANLSAFHLQHGVGCDESGFITKIVKEVSRKHYYAPLANEDHLVGLDDPLEELCSLMDMKSDSVLKIGIFGMTCVGKTTLARAVYNRIAHQFEGDCFLDVKGNGLVCLQNRLLFDIVGEDIQIESADRGASLIKYWLQQKKVLLILDDVDTLEQLEALVGGQDWFGSGSRIIVTTSDSHLLAHQGFQITYNVKFLNDKYAYDLFIHNAFRQGEVEPMYAEVLHPIFAYADGLPLVLETVGSALYGKSVDEWRYAFYGLKSHTHNDIYKIQRRSFDNLSEDEQTVFLDIACCFNGYKLTELNRILCAHYGRKIKHLVDGLIVKSLLSIGLDGKVRVHELIEDMGKEIVRQESPDPGKHSRLWSHDDILYILKTNKGTDKIQIIHLDPPLIGDEAIEWDGEAFKKMENLKTLVIKKCHFSNAPKHLPSSLRVLQWWNYPSQKLPCDFDSKQLVILWMSQDKGVALALLTELFMTYQIICKVRVETQMVMLEGRTMLFYFYYFPIQKLLILTRLTDISKALQTCKRAARVMLQASVRVLHAEVTWRLVGLVSSVVGLLCYALSPSFNQLIGGWNSFKIVLYAMFSLIIGATILFGKKSSLSVRYVEYKTYMKFAVLMIVSVYSFYYDNAVAGKPELLSVVSNAALALMSLSLSRLVKLGFEIGIFSYFLGCLVIQLWTIDGKLILVAIIFGCPLFIMQSSLDSEPEVCNGSQVINSDSQTVLTNGGQDIHPNSQTVLTNRGQDIHSSSDATP 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00445 893 Gene3D - 338 422 IPR042197 -
Vifa1g00445 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 432 IPR027417 -
Vifa1g00445 893 Gene3D - 178 333 IPR027417 -
Vifa1g00445 893 ProSiteProfiles TIR domain profile. 11 176 IPR000157 GO:0007165
Vifa1g00445 893 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 149 IPR035897 -
Vifa1g00445 893 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 624 IPR044974 GO:0006952
Vifa1g00445 893 SMART till_3 12 148 IPR000157 GO:0007165
Vifa1g00445 893 Pfam TIR domain 13 177 IPR000157 GO:0007165
Vifa1g00445 893 SUPERFAMILY "Winged helix" DNA-binding domain 409 515 IPR036390 -
Vifa1g00445 893 Pfam NB-ARC domain 200 421 IPR002182 GO:0043531
Vifa1g00445 893 Gene3D - 11 177 IPR035897 -
Vifa1g00445 893 PRINTS Disease resistance protein signature 280 294 - -
Vifa1g00445 893 PRINTS Disease resistance protein signature 373 387 - -
Vifa1g00445 893 PRINTS Disease resistance protein signature 210 225 - -
Vifa1g00445 893 PRINTS Disease resistance protein signature 546 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00445 Vifa-Chr1 70829698 70845130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00445 8 597 WRKY Transcription Factor Family AT4G12020 29.853 2.70e-52 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00445 - - psat:127132204 779.245