Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00441 ATGACGAACCAAAATGTTTTGGGGAAGCAACGTGTGAATGAGAGGCTTATGGAGATAGCAATGTCGTTTTCTAATTCTAATGATTTGCCAGCAACAGCAGTTCCTGAATTAATGGCTTTGTTTGGTGAGTTTTTGGCTCAGCCTAAAAACAATCTTCTTAAGCCTTTGGAAGATCAAAATGCCAAAGGAATTGCAAAAACTAACACATGGATTGATTCCATGAGAGCTTCTTCTCCTTCTAGAACAAGAAACAACGCCGAAAATCGCGAACAAATTCATTGGAAGCTTTTTCATCCTTCTGCATTGAATATGTTTGATCAAATAATGCACAAAGCAAATGGAAAACAAATAGTTGTTTTTCTTGACTATGATGGAACTCTCTCACCAATTGTTGCAGATCCAAATAAAGCTTACATGACTAAAAAGATGAGAATGACATTGAAGGACATAGCAAAACATTTTCCCACAGCTATAGTTAGTGGAAGGTGTTTAGACAAGCTATTTAGCTTTGTAAGATTGACAGAATTATATTATGCTGGAAGCCATGGAATGGATATAAAAGGACCAACAAATAGGAAAAACACTAAAAATGGTAGTAATGATGGAGTACTTTTGCAGCCTGCAAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAAATTTTGGTGGAAAAAACAAAGAATGTCCTCGGAGCTATGGTGGAAAATAATAAATTTTGTTTGTCTGTACATTTTCGTTGCGTTGATGAAAAGAGTTGGGCAATATTGGGTGAACAAGTAAGCTTAGTGCTTAATGAATACCCAAAATTAGAGCTAACTCAAGGAAGAAAAGTGTTGGAAATTCGACCAACCATAAAATGGGACAAAGGAAGAGCTCTTGAGTTTTTGTTAGAGTCACTTGGATTTGCAAACTCTAACAACGTATATCCAATCTATATCGGTGATGATCGAACGGACGAAGATGCTTTTAAGGTTTTAAGCAATAGAGGCCAAGGGAGTGGGATTCTTGTTTCCAAGATTCCAAAAGAAACCAAAGCTTCTTACACATTGCAAGATCCATCTGAGGTTGGACAATTTTTGCAGCATTTGGTGGAATGGAAAAGAACAAATTCTCATAACCACAAGTTGTAG 1131 0.366 MTNQNVLGKQRVNERLMEIAMSFSNSNDLPATAVPELMALFGEFLAQPKNNLLKPLEDQNAKGIAKTNTWIDSMRASSPSRTRNNAENREQIHWKLFHPSALNMFDQIMHKANGKQIVVFLDYDGTLSPIVADPNKAYMTKKMRMTLKDIAKHFPTAIVSGRCLDKLFSFVRLTELYYAGSHGMDIKGPTNRKNTKNGSNDGVLLQPASEFLPMINEVYKILVEKTKNVLGAMVENNKFCLSVHFRCVDEKSWAILGEQVSLVLNEYPKLELTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSNNVYPIYIGDDRTDEDAFKVLSNRGQGSGILVSKIPKETKASYTLQDPSEVGQFLQHLVEWKRTNSHNHKL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00441 376 NCBIfam trehalose-phosphatase 115 364 IPR003337 GO:0003824|GO:0005992
Vifa1g00441 376 FunFam Trehalose 6-phosphate phosphatase 208 284 - -
Vifa1g00441 376 CDD HAD_TPP 118 357 - -
Vifa1g00441 376 Gene3D - 119 350 IPR023214 -
Vifa1g00441 376 Gene3D - 199 284 - -
Vifa1g00441 376 Pfam Trehalose-phosphatase 120 354 IPR003337 GO:0003824|GO:0005992
Vifa1g00441 376 NCBIfam HAD-IIB family hydrolase 119 327 IPR006379 -
Vifa1g00441 376 SUPERFAMILY HAD-like 118 367 IPR036412 -
Vifa1g00441 376 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Vifa1g00441 376 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 60 373 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00441 Vifa-Chr1 69554706 69556972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00441 113 363 Trehalose Biosynthesis Gene Families AT1G23870 25.651 1.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00441 K01087 - gmx:100785139 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00441 1 69554706 69556972 Vifa2g01861 2 484228836 484230841 PCT