Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00439 ATGACAATTGGAAGTCTTGCACCTAAGACAGAGAGGAAGAAATCAAGAAAGAACAAGGCAATTGTGAATGAGAATGCACCCTTGTTGCCTAAAAGTCAAGCCAACGAGAGCGATTCCGGGTTCGATGATTTCAATGGAGCTTCGTATTCCGGTGCTGTTTTCAACTTGGCAACTACAATTATCGGTGCCGGAATCATGGCTTTGCCTGCGACCGTGAAACAGTTAGGAATGATTCCTGGTCTTCTTGGTATACTCATGATGGCTTTTTTGACTGAGAAGTCAATTGAGCTTTTGATTAGGTTTACAAGGGCAGGAAAATCTGTTTCATATGCTGGTTTGATGGGTGATTCGTTCGGGAAATATGGAAAAGCTTTGACGCAGATTTGTGTTATCGTCAATAACGTTGGCACGCTTATCGTTTACATGATTATAATCGGTGACGTGCTCTCTGGAACATCTTCAAGTGTAGAACATCACCACGGTATCCTTGAAGGATGGTTTGGTGTGCATTGGTGGACTGGACGTACGTTTATTGTCCTTCTTACGACGGTTGCTATATTTGCTCCCCTCGCATGCTTTAAGCGAATTGATTCGTTGAGATTCACATCCGCCCTCTCTGTTGCACTGGCTGCTGTTTTTCTTGTCATTGCTGTGGGAATTTCTGTTGTCAAGATCATAAGTGGAGGCATTAGCATGCCGAGACTCTTCCCTATTGTTACCGATGCATCATCTATCATTGACCTATTCACCGTGGTTCCCGTGTTTGTCACTGCCTATATCTGTCACTACAACGTTCACAGCATCGATAACGAACTCGAGGACAACTCACAGATGCAAAGCGTTGTACGTACGGCCCTTGGTCTATGCTCATCCGTCTACATGATGATAAGCTTCTTCGGTTTCCTCCTATTCGGTGAAGGAACCCTTGATGACGTGCTTGCCAACTTCGACACCGATCTCGGAATTCCTTTTGGTTCTTTGCTCAACGACGCTGTTCGTATTAGCTACGCAGCACACCTCATGTTTGTATTTCCAGTTGTGTTTTTTCCGTTGCGACTCAATATAGACGGTCTTCTCTTCCCTTCGTCAAGACCTTTGGTTCTCGATAACTTCAGATTCGCATCAATCACTGCTTCCCTTATTGGTGTTATCTTCCTTGGAGCAAACTTCATTCCTAGCATTTGGGATGCTTTCCAGTTCACTGGAGCAACCGCCGCAGTCTGTATAGGATTCATCTTTCCAGCTGCCATCACTCTCAAGGACCGCTACAACATAGCAACAAGATCAGACAAGATTCTGTGCGTCGTTATGATAGTCCTGGCTGTCGCCTCAAATGTTGTGGCTATATACAGCAACGCATTTGGGTTGATCACGAAGAGCAATACTTCGCGCGAATGA 1398 0.4499 MTIGSLAPKTERKKSRKNKAIVNENAPLLPKSQANESDSGFDDFNGASYSGAVFNLATTIIGAGIMALPATVKQLGMIPGLLGILMMAFLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALTQICVIVNNVGTLIVYMIIIGDVLSGTSSSVEHHHGILEGWFGVHWWTGRTFIVLLTTVAIFAPLACFKRIDSLRFTSALSVALAAVFLVIAVGISVVKIISGGISMPRLFPIVTDASSIIDLFTVVPVFVTAYICHYNVHSIDNELEDNSQMQSVVRTALGLCSSVYMMISFFGFLLFGEGTLDDVLANFDTDLGIPFGSLLNDAVRISYAAHLMFVFPVVFFPLRLNIDGLLFPSSRPLVLDNFRFASITASLIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATRSDKILCVVMIVLAVASNVVAIYSNAFGLITKSNTSRE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00439 465 Pfam Transmembrane amino acid transporter protein 48 450 IPR013057 -
Vifa1g00439 465 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g00439 465 PANTHER AMINO ACID TRANSPORTER 42 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00439 Vifa-Chr1 68485050 68487192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00439 3 465 Amino Acid or Auxin Permease AAAP Family AT3G30390 67.603 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00439 K14207 - gmx:100796345 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00439 1 68485050 68487192 Vifa1g05434 1 844029183 844031322 PCT