Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00430 ATGGGAAATTCCACAAGATCTGATTCCAAGAGACTCATCATCATTGTTTTCTTCTTCTTCTCTATCTCACTCTTTTCTCTTCCGAGATCCTCAAAACCCAAAACACATACTCGAACATCCAAATTCAGACCTTATCTTCACACTTCACAAACCAATTCCTCTCATAAATTTTCCGCCCTTCAATTACAATCCATCATCATAACTACACTGAGCTTCCACCCACCGCCTCCTCCGTTCCAATACTCTTCCCTTGTTCCGTTCTTCTATAGGAACCACCCTTCATCTCACTCTGCTGAACAACAGTCGGAACATCTACCCACCATCCCTTTTGTTATGCCCGCCTTCCACCCTTTGAATCCGGCCAGAACACCCGAAGTAACACTTGCAGTTTTGGCCAGCTCAACACAAACACTGTCACCAAACCGAGTTAATTTCCTACACACACTATTTATCAAAACTCCACCTCTTCAGAAGATTAAAAGAATCGAACCATCCGTATCCATATCACCTAGTCCTAGTCCAAGCACCAAATCGTTAACTCCACCGTATAAGGCTGTTCCGGCACCATCAACTGCTGAAAGGAATTTTCCACCATCCATACAACCAATTCCACCTCAAAGGAAAGCACCTACTTTTAGTCCTCTCATATCCTCACCAATTGCTCCAGCTCTTGTTACAATACCTCCTGAAATTTTGCCTAAAACTTCACCTATCAGTCAACCAATCGAACATGGCAGTTTGCCTCCTAAGGTTGATAAGAGGAATGAAAGTAAAAGTCACAATTTAGAACCAGTTTCACCAGAAGCATTTCATCAAACACCACCATACACCCTTTCATCTATTACCCAACACACATACATAAGACACACACAAGTTGAGGCTTACAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGTGGTCTTGGTATTAATCTTGCTACCGCTAATGTCGTCATTCTGTATGATAGTGAGTGGAACCTACAAGTTGATTTGCAAGCTCAGGATCGTGCTCATAGGATAGGTCAGAAAAAAGAAGTTAAAGTGTTCCGTTTTTGCACTGAGTATACAATCGAGGAGAAAGTCATTGAAAGAGCTTACCAAAATCTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGGTTAGCTGAGCAGAAGACGGTAAACAAAGATGAGTTGCTTCAAACGGTTAGATTTGGAGTTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGATATTGATAGAATTATTGCCAAAGGAGAAGCAACAACAACCGCAAATCCGCAACAAACACCCTCTGCCTCGACACAGCTACAACCTCTTACGACCAAACTCGTCTGACCATCGTGCAGCCTTCATCCGGTTGAACATCTCAGCATCACACTGTTGCTACAGATCTACGGCCAACGAAAAAGAAGCTAAGAAGGAATCATTCAGAAAATATCTTGAATCAAGTGGAGCCGTTGATGCTCTAATCAAAGTTCTTGTTGCCTTGTATGAGCAAAACGACAAACCTTCTTCTGCTCTTGAGTCCATTCAACAGAAGTTAAGTTGCCCTTCAAATTCCGGTTCTTCTCACTACTACTGA 1614 0.4219 MGNSTRSDSKRLIIIVFFFFSISLFSLPRSSKPKTHTRTSKFRPYLHTSQTNSSHKFSALQLQSIIITTLSFHPPPPPFQYSSLVPFFYRNHPSSHSAEQQSEHLPTIPFVMPAFHPLNPARTPEVTLAVLASSTQTLSPNRVNFLHTLFIKTPPLQKIKRIEPSVSISPSPSPSTKSLTPPYKAVPAPSTAERNFPPSIQPIPPQRKAPTFSPLISSPIAPALVTIPPEILPKTSPISQPIEHGSLPPKVDKRNESKSHNLEPVSPEAFHQTPPYTLSSITQHTYIRHTQVEAYNKPGSEKFVFLLSTRAGGLGINLATANVVILYDSEWNLQVDLQAQDRAHRIGQKKEVKVFRFCTEYTIEEKVIERAYQNLALDALVIQQGRLAEQKTVNKDELLQTVRFGVEMVFSSKDSTITDEILIELLPKEKQQQPQIRNKHPLPRHSYNLLRPNSSDHRAAFIRLNISASHCCYRSTANEKEAKKESFRKYLESSGAVDALIKVLVALYEQNDKPSSALESIQQKLSCPSNSGSSHYY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00430 537 CDD SF2_C_SNF 288 358 - -
Vifa1g00430 537 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 288 435 - -
Vifa1g00430 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 219 388 IPR001650 -
Vifa1g00430 537 MobiDBLite consensus disorder prediction 235 273 - -
Vifa1g00430 537 Pfam Helicase conserved C-terminal domain 290 347 IPR001650 -
Vifa1g00430 537 MobiDBLite consensus disorder prediction 164 212 - -
Vifa1g00430 537 MobiDBLite consensus disorder prediction 164 180 - -
Vifa1g00430 537 SMART helicmild6 260 347 IPR001650 -
Vifa1g00430 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 422 IPR027417 -
Vifa1g00430 537 Gene3D - 275 442 IPR027417 -
Vifa1g00430 537 PRINTS C-Myc-binding protein signature 505 519 - -
Vifa1g00430 537 PRINTS C-Myc-binding protein signature 481 491 - -
Vifa1g00430 537 PRINTS C-Myc-binding protein signature 491 505 - -
Vifa1g00430 537 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00430 Vifa-Chr1 68138272 68140763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00430 304 399 RAD5 or RAD16-like Gene Family AT5G05130 42.857 7.52e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00430 K11654 - gmx:100791510 240.35