Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00428 ATGTTTTTTCTACCTGCAGGTAGAAGATGGGGTTTTCCTAGATTTGCTGGTGACTGTGCCAATGGTATGAAGAAGTATCCTCCAGGAACAATTTTAGAGCACAAAAGTGATATCACTGATTCTTGCTCTCAGATGATACTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTCAGGATTAAAATTATTTCTGGATCACCTTGCGAATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTGCAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACCTTCTGAGCAAGGTGATATACCTGAAAAACAGTCCGAAAACAAGATGGATTCTGTAGTAGATTCTATCAAAGGACCGAATGTTACTCCGACTAGCAGCCCCGAGCTACGGACGCCATTCACCGCTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCAGATCCTGGAACTTCACCGTTCTGTATTCCAGAGATGAATGGTGAGACGAAGAGAGAAGAAACCATTAAGGAAAGTCATGAACTTTGTGATACATCAGACACAGAAAGTGAAAGTCTGTCGACATCTTCGGCTAGCTTTAGATACCAACCGTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCAGAGGCGTATCATGGTATGCCTCAGGCAACTACAACCAAGGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCTGGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCGATAGCATTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCGATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCTAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCTACCGGGGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGAGGATAAGAGAAGGCTTCTGGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGAGATCCATTAGAATGGTCTGCGAGGCAGAAAATTGCTGTTGGAGCTGCTCGCGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCGACATGAGGCCGAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGTCGATGTTTATTCCTTTGGGGTGGTATTGGTGGAGCTTGTTACCGGTAGAAAAGCTGTCGATCTCACTCGGCCAAAGGGACAACAGTGCCTAACTGAGTGGGCCCGGCCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGACTTGGACGTCTCTATTTAGAACATGAAGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGAGACATGGTGATGGACACAAATTACATTTCAACTCCGGGCTATGATGTCGGAAATAGAAGTGGTCGCATTTGGTCAGAGCCACTGCAGAGACAGCATCATTACAGCGGTCCCCTCTTAGAAGATTCATTAGAGTCATCATTCAGTGGAAAGCTATCTCGTGACAAGTACAAAACTTTCTATTGGGATAGGAGTAGGGACAAGCCTTAA 1986 0.4416 MFFLPAGRRWGFPRFAGDCANGMKKYPPGTILEHKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCESVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSPSEQGDIPEKQSENKMDSVVDSIKGPNVTPTSSPELRTPFTATTEAGTSSASSSDPGTSPFCIPEMNGETKREETIKESHELCDTSDTESESLSTSSASFRYQPWITELLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGAGMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSICQHKAPVFGKPLRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKVDVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGRLYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHHYSGPLLEDSLESSFSGKLSRDKYKTFYWDRSRDKP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00428 661 Gene3D Transferase(Phosphotransferase) domain 1 397 603 - -
Vifa1g00428 661 MobiDBLite consensus disorder prediction 202 222 - -
Vifa1g00428 661 MobiDBLite consensus disorder prediction 159 195 - -
Vifa1g00428 661 Pfam Protein kinase domain 384 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00428 661 SUPERFAMILY Protein kinase-like (PK-like) 333 600 IPR011009 -
Vifa1g00428 661 ProSiteProfiles Protein kinase domain profile. 274 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00428 661 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 390 - -
Vifa1g00428 661 MobiDBLite consensus disorder prediction 127 230 - -
Vifa1g00428 661 PANTHER OS01G0750732 PROTEIN 240 599 - -
Vifa1g00428 661 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 397 600 - -
Vifa1g00428 661 Gene3D Phosphorylase Kinase; domain 1 323 396 - -
Vifa1g00428 661 ProSitePatterns Tyrosine protein kinases specific active-site signature. 442 454 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00428 Vifa-Chr1 67748146 67757891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00428 288 587 Trihelix Transcription Factor Family AT1G68690 45.482 1.18e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa1g00428 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00428 - - cam:101503019 1135.17