Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00424 ATGGTAGGTAGAATGGATTTCTTCAACAATTCGCAAGATCCATTCAATGGTGAGTTAATGGAAGCACTTGAACCTTTTATCAAGAGTTCTTCCACTACTCCTTCATCTTTATCTACACCCCCTTCTCTAAATTCACACCACCCTTCAACTTCATCACAATTTTACTCTTCTACCCTTACCTATTTCCAACCCTCTTTTCCTCCTCCACGGCCCAATTTCTACAGAGAAAATGGTTATTGTTCATCCATGATGAATTACCAATTTCCCTCCTCAGGTAATTCATCAAACAGCCAGAATTTCATTGGCTTTGAACAACAACCACAACCAAATTCTGTAATTGGGCTAAACAACTTAACCTCATCTCAAATCAATCAGATCCAAACCCAGATTCAGTTTCAGTCTCAACAAATCAATCCAAATTTGAGTTTCCTTGGGCCTAAGCCCGTCCCAATGAAACAGTCCGGTGCACCTCCGAAGCCGACGAAGCTTTACAGAGGTGTAAGGCAGAGACATTGGGGAAAATGGGTTGCTGAGATAAGATTGCCCAAGAACAGAACAAGGCTCTGGCTTGGGACTTTTGATACTGCTGAACAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTCGCCAGGCTTAATTTCCCCAACATGAAGGACCAACAAGGTTTGCTTGGGGAGTTTAAGACTCTGCATTCGTCTATTGATGCTAAACTTGATGCTATTTGTGAGAGTTTAGGCAGTGATGATGCCAAGAAATCAGGGAAAGTGGAGAAAAAAGTGAAAGGTTCTAAGAAAGATTTGAAAAAAGAGGTTCAACCAAGTCTTGTTGCTGATAACAAGAAAGTTGTTGTTGAAAGCTCTTTGTGTTCAAGTGAAGGGTCTGATGATTCTTCTCCTCTTTCTGATCTCACTTTTGGTGATTTTGGGGAGCCACAGTGGGAAAATTGTTGTGAGCAGCTTAAGTTGCACAAGTTTCCTTCTTATGAGATTGATTGGGATTCTATTTGA 1023 0.4076 MVGRMDFFNNSQDPFNGELMEALEPFIKSSSTTPSSLSTPPSLNSHHPSTSSQFYSSTLTYFQPSFPPPRPNFYRENGYCSSMMNYQFPSSGNSSNSQNFIGFEQQPQPNSVIGLNNLTSSQINQIQTQIQFQSQQINPNLSFLGPKPVPMKQSGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEQAALAYDRAAYRLRGDFARLNFPNMKDQQGLLGEFKTLHSSIDAKLDAICESLGSDDAKKSGKVEKKVKGSKKDLKKEVQPSLVADNKKVVVESSLCSSEGSDDSSPLSDLTFGDFGEPQWENCCEQLKLHKFPSYEIDWDSI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00424 340 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Vifa1g00424 340 SUPERFAMILY DNA-binding domain 163 220 IPR016177 GO:0003677
Vifa1g00424 340 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 340 - -
Vifa1g00424 340 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
Vifa1g00424 340 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Vifa1g00424 340 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00424 Vifa-Chr1 67057244 67058266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00424 1 340 AP2-EREBP Transcription Factor Family AT1G78080 47.594 1.14e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g00424 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00424 K09286 - gmx:100800478 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00424 1 67057244 67058266 Vifa2g01855 2 482501500 482502564 PCT