Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00422 ATGGCAGGTAGAATGGATTTCTTCAACAATTCGCAAGATCCATTCAATGGTGAGTTAATGGAAGCACTTGAACCTTTTATCAAGAGTTCTTCCACTACTCATTCATCTTTATCTACACCCGCTTCTCTAAATTCACACCTCCCTTCAACTTCATCACAATTTTACTCTTCTACCCTTACCTATTTCCAACCCTCTTTTCCTCCTCCACGGCCCAATTTCTACAGAGAAAATGGTTATTGTTCATCCATGATGAATTACCAATTTCCCTCCTCGGGTAATTCATCAAACAGCCAGAATTTCATTGGCTTTGAACAACAACCACAACCAAATTCTGTAATTGGGCTAAACAACTTAACCTCATCTCAAATCAATCAGATCCAAACCCAGATTCAGTTTCAGTCTCAACAAATCAATCCAAATTTGAGTTTCCTTGGGCCTAAGCCCGTCCCAATGAAACAGTCCGGTGCACCTCCGAAGCCGACGAAGCTTTACAGAGGTGTAAGGCAGAGACATTGGGGAAAATGGGTTGCTGAGATAAGATTGCCCAAGAACAGAACAAGGCTCTGGCTTGGGACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTCGCCAGGCTTAATTTCCCCAACATGAAGGACCAACAAGGTTTGCTTGGGGAGTTTAAGACTATGCATTCGTCTATTGATGCTAAACTTGATGCTATTTGTGAGAGTTTAGGCAGTGATGATGCCAAGAAATCAGGGAAAGTGGAGAAAAAAGTGAAAGGTTCTAAGAAAGATTTGAAAAAAGAGGTTCAACCAAGTCTTGTTGCTGATAACAAGAAAGTTGTTGTTGAAAGCTCTTTGTGTTCAAGTGAAGGGTCTGGTGATTCTTCTCCTCTTTCTGATCTCACTTTTGGTGATTTTGGGGAGCCACAGTGGGAAAATTGTTGTGAGCAGCTTAAGTTGCACAAGTTTCCTTCTTATGAGATTGATTGGGATTCTATTTGA 1023 0.4086 MAGRMDFFNNSQDPFNGELMEALEPFIKSSSTTHSSLSTPASLNSHLPSTSSQFYSSTLTYFQPSFPPPRPNFYRENGYCSSMMNYQFPSSGNSSNSQNFIGFEQQPQPNSVIGLNNLTSSQINQIQTQIQFQSQQINPNLSFLGPKPVPMKQSGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGLLGEFKTMHSSIDAKLDAICESLGSDDAKKSGKVEKKVKGSKKDLKKEVQPSLVADNKKVVVESSLCSSEGSGDSSPLSDLTFGDFGEPQWENCCEQLKLHKFPSYEIDWDSI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00422 340 SUPERFAMILY DNA-binding domain 163 220 IPR016177 GO:0003677
Vifa1g00422 340 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Vifa1g00422 340 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Vifa1g00422 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 340 - -
Vifa1g00422 340 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Vifa1g00422 340 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Vifa1g00422 340 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Vifa1g00422 340 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Vifa1g00422 340 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700|GO:0006355
Vifa1g00422 340 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00422 Vifa-Chr1 67039754 67040776 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00422 1 340 AP2-EREBP Transcription Factor Family AT1G78080 47.326 1.63e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g00422 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00422 K09286 - cave:132166021 283.108