Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00399 ATGGTGGTTGTTTTAGCTTCATCCTCTGATGCTGGTGGTGGGATTGGATGTTGGGACCTTCACACAGGTACTGAGCAGATCCGCTATAAATCATTATCTTCCCCTGCCCATGGACTTGTCTCCGTTGGTGATCGTTTTCTTGCATCTTCTCAGCTCCGAGACGCATCAACTTCCTCTGGTTCTGTTTTCTTTTGGTCCTGGTCCAAGCCTCAAGTTGAAGTGAAGAGCTTTCCCGCTGAACCCATTACGCCTCTTGCTGCTAATCACAGTGGCACCTATCTTGTTGCTGGAGGTTTGTCAGGTGAAATATACTTGTGGGAGGTTGAAACCGGAAAATTGCTTAAGAAGTGGCATGGTCATAATATGGCTGTTACTTGCCTGGTATTTTCTGAAGATGACTCACTTCTAATATCTGGTTTTAAAAACGGAAGCGTACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACGGGAAGCAAGCCAGATTTACGAGTATAGTTTTTCAGATCACACTTTGTGTGTAAATGATGTTGTGATTGGTTCTGGAGGGTGCAATGCAATTATAGTTTCAGCATCGGATGATCGGACGTGTAAGGTATGGAGCTTATCTAATGGAATGCTACAAAGAAATATAGTATTCCCTTCAAAGATTAAAGCTATTGCATTGGATCCAGCTGAACATGTCTTTTATGCTGGCAGTGGAGACGGAAAAATATTTATCGTTGCACTTAACACCACAAAAATTGCTACCAATAATCACGTTTCATATATCATTGATTCGTTTTCTAACCACAGCAAGACAGTTACTTGCTTGGCATATAGCGCCGGTGATAACTTTTTAATATCGGGATCTGAGGATGGAATAGTTCGAGTTTGGAATGCAAGTACTCATAACATCATCCGTGTCTTTAAACATGCTAAAGGACCAATAACTAATATCATTGTTGTAAGACCCGAAAATGATTCAAGTAATCATATGTCTTCAAATTTACAAGCAGCCTCAAAAAAGAAGGGAGCTCAATTTCCTCCTTTGGAAAAATATGCAAATTCAATAGACGGACATTTACATTCAGTTACGAAGACCATCGTCAGTCTTGGCGATAGCGATAGATGCATGGATGTTTCATACCTTAGTTCTCATGTGATTTCTAATTACAGTAAAGAACTTCAGAATCAAGGTTCGACTGCTGCTTCTGAAATGGAGATAGAGAAACTAAAATGCGATTGCCAAAAGTCTGCGCAGATGGTTAATCAATGGAAGAAAATGTATGAAAACTTGCATCAATTTTGTGTAAAAGAGCTGGTAGATGAAAATAAGAATTAA 1332 0.3964 MVVVLASSSDAGGGIGCWDLHTGTEQIRYKSLSSPAHGLVSVGDRFLASSQLRDASTSSGSVFFWSWSKPQVEVKSFPAEPITPLAANHSGTYLVAGGLSGEIYLWEVETGKLLKKWHGHNMAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASQIYEYSFSDHTLCVNDVVIGSGGCNAIIVSASDDRTCKVWSLSNGMLQRNIVFPSKIKAIALDPAEHVFYAGSGDGKIFIVALNTTKIATNNHVSYIIDSFSNHSKTVTCLAYSAGDNFLISGSEDGIVRVWNASTHNIIRVFKHAKGPITNIIVVRPENDSSNHMSSNLQAASKKKGAQFPPLEKYANSIDGHLHSVTKTIVSLGDSDRCMDVSYLSSHVISNYSKELQNQGSTAASEMEIEKLKCDCQKSAQMVNQWKKMYENLHQFCVKELVDENKN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00399 443 Gene3D - 213 326 IPR015943 GO:0005515
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Vifa1g00399 443 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 243 - -
Vifa1g00399 443 Gene3D - 2 212 IPR015943 GO:0005515
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 116 IPR001680 GO:0005515
Vifa1g00399 443 SUPERFAMILY WD40 repeat-like 11 318 IPR036322 GO:0005515
Vifa1g00399 443 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vifa1g00399 443 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Vifa1g00399 443 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Vifa1g00399 443 Pfam WD domain, G-beta repeat 111 149 IPR001680 GO:0005515
Vifa1g00399 443 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Vifa1g00399 443 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Vifa1g00399 443 SMART WD40_4 257 296 IPR001680 GO:0005515
Vifa1g00399 443 SMART WD40_4 70 107 IPR001680 GO:0005515
Vifa1g00399 443 SMART WD40_4 207 245 IPR001680 GO:0005515
Vifa1g00399 443 SMART WD40_4 163 204 IPR001680 GO:0005515
Vifa1g00399 443 SMART WD40_4 110 149 IPR001680 GO:0005515
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Vifa1g00399 443 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Vifa1g00399 443 PANTHER WD-REPEAT PROTEIN 18 2 437 IPR045227 -
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vifa1g00399 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 213 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00399 Vifa-Chr1 63562215 63565691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00399 80 338 Eukaryotic Initiation Factors Gene Family AT2G46280 22.180 3.93e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00399 K14829 - gmx:100775776 642.499