Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00395 ATGAGTCATCCAGCTGATGAAAATGTTGAAACAAAAGAGATGGATGGCAGAAGTTTGTCTTCAAATGGACAGGAACCATACGTGCACAAGGTTGGAATTCCTCCAAAACAAAGCTTCTTCAAGGAATTCATATACACCGTAAAAGAAACATTCTTCTCAGACGATCCTCTACGGCCTTTCAAGGATCAGACAAAGTCCCGGAAGTTCGTTCTGGGAATTGAAGCCATATTCCCTATACTTAGTTGGGGAAGAACTTATAACCTCCAAAAATTTAGAGGGGATCTTATTGCCGGTTTAACTATTGCGAGTCTCTGCATTCCTCAGGACATTGGATACTCAAAGCTTGCTAATTTGTCTCCACAGTATGGACTTTACTCCAGCTTTGTTCCACCACTGATTTATGCGGTTATGGGTAGTTCACGCGATATTGCAATTGGACCAGTAGCGGTGATTTCTCTCTTGTTAGGGACTTTACTCCAAAATGAGATTGATCCCAAAACAAATCCTACAGAGTATAGAAGACTCGCTTTTACTGCCACGTTTTTTGCTGGGATTACGCAGGCAACTCTTGGCATTTTTAGGTTAGGATTTTTGATTGATTTTCTATCGCATGCCGCAATTGTTGGTTTTATGGGGGGAGCAGCCATCACAATTGCTCTTCAACAGCTTAAGGGTTTCCTTGGGATTGAAAAGTTCACAAGGAAAACCGATGTAATCTCTGTGATGCATTCAGTGTTCTCATCAGCCCATCATGGATGGAATTGGCAAACTATATTAATTGGAGCTACCTTTCTTTGTTTTCTTCTGTTTGCCAAGCATATTGGAAAGAAGGGCCAAAAATACTTCTGGGTGCCGGCAATTGCTCCATTGGTATCTGTTGTACTCTCAACTTTTTTCGTTTACATAACCCGAGCAGACAAGCATGGTGTTGCGATTGTAAACCATATAGAGAAAGGGATCAATCCTTCATCTGTGAAGGAAATTTATTTTACCGGTGACTACCTTGCGAAAGGTGTTAGAATTGGCATTGTGGCTGGCATGATAGCTTTGACTGAAGCCATAGCAATTGGAAGAACATTTGCTTCTATGAAGGACTATCAGGTGGATGGAAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTAGCAACTGGTTCTTTCTCCCGGTCAGCAGTAAATTACATGTCCGGGTGTGAAACTGCGGTCTCTAATATTGTCATGTCTGTTGTTGTGTTCTTAACCCTCCAATTCATCACACCTCTTTTCAAATACACTCCAAATGCCATTCTTGCTTCAATTATCATTTGTGCCGTCATCAACCTTGTAGACTATAAGGCAGCTATTTTGATATGGAAAATTGATAAATTTGACTTTGTTGCCTGCATGGGAGCATTTTTCGGGGTCGTTTTTGCCTCGGTTGAGATAGGACTTTTGATTGCTGTCTCTATATCCTTTGCAAAGATCCTATTGCAAGTCACGAGGCCTCGAACGGCTATTCTAGGGAAGATCCCTAGGACAACTGTGTATAGAAACATCCAGCAATATCCAGAGGCCACAAGTGTTCCTGGTGTATTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTAAGATGGCTGATGGACGAGGAAGAACGAGTGAAAAGAGAGTACCAAACACGAATCCAGTTTTTGATAGTTGAGATGTCACCTGTTACTGATATTGATACCAGTGGCATCCATGCCCTGGAAGAGTTATTTAGGAGTCTTCAGAAGAGAGAAGTTCAGCTTGTTTTGGCGAATCCCGGTCCATTAGTGATAGACAAACTCCACACGTCCAACTTTGCAAATTTTCTTGGTGAAGACAAGATCTTCCTCACAGTCGCAGAGGCTGTTGCATACTGTTCTCCAAAGCTGGCTGAAGAACCCTGA 1965 0.4142 MSHPADENVETKEMDGRSLSSNGQEPYVHKVGIPPKQSFFKEFIYTVKETFFSDDPLRPFKDQTKSRKFVLGIEAIFPILSWGRTYNLQKFRGDLIAGLTIASLCIPQDIGYSKLANLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVISLLLGTLLQNEIDPKTNPTEYRRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIEKFTRKTDVISVMHSVFSSAHHGWNWQTILIGATFLCFLLFAKHIGKKGQKYFWVPAIAPLVSVVLSTFFVYITRADKHGVAIVNHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQVDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMSGCETAVSNIVMSVVVFLTLQFITPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATSVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVKREYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQLVLANPGPLVIDKLHTSNFANFLGEDKIFLTVAEAVAYCSPKLAEEP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00395 654 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Vifa1g00395 654 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g00395 654 PANTHER SULFATE TRANSPORTER 37 647 IPR001902 GO:0016020|GO:0055085
Vifa1g00395 654 Gene3D STAS domain 503 650 IPR036513 -
Vifa1g00395 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Vifa1g00395 654 Pfam STAS domain 524 642 IPR002645 -
Vifa1g00395 654 SUPERFAMILY SpoIIaa-like 525 647 IPR036513 -
Vifa1g00395 654 Coils Coil 559 579 - -
Vifa1g00395 654 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020
Vifa1g00395 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
Vifa1g00395 654 FunFam Sulfate transporter 31 503 649 - -
Vifa1g00395 654 NCBIfam sulfate permease 78 642 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00395 Vifa-Chr1 62963359 62967041 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00395 2 653 Inorganic Solute Cotransporters AT1G22150 76.840 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00395 K17470 - gmx:100797668 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00395 1 62963359 62967041 Vifa2g01838 2 477148394 477152059 PCT