Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00391 ATGGGTTCCTTTTGTTCTTGTTTGAGTGGTGATGATTTGGAAGATTATATGGATCCACATAGCCATGTATACAGAAACTGCGTGTGTGCCGGTTGCTTCCTACAAAACCTTTTGGCTGTTTATTCATTAGTATTTCGTAGAGGGGAAATGCACGCGCTTCCTTCATCGGTACAGGGGGCAGCATCTATGACGACTTCAGCATCACTTGATAGTTCCCTATCTGACATGTATCGTTCTCCTCCAAGACCGCTGCCTTATGATGCAGACCCTAGGCATTTCCGCTCACAGCACGACGGACTAGTTTCAAGACGTGAAAAGGGTTCCAGTCATTTGAATGAGGAGTCAGAACTTCTAAGAGGCGATGTGGATGCAGATACAGAATCTTTTAATTCGAGTGGTAAATGGAATGAATCCACTGGCAAAGATGGATCAAAAGAATACCGTTCCAAGTCCTCAGTTAGACTTTCGTCCACAAAACTTACAACTGGAGACGTGCTTGTGTACCCGTCGTCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACTGAGGAGAATCCGAAGATAATGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGATGATGTTATTTGATGAAACGACTTGA 684 0.4327 MGSFCSCLSGDDLEDYMDPHSHVYRNCVCAGCFLQNLLAVYSLVFRRGEMHALPSSVQGAASMTTSASLDSSLSDMYRSPPRPLPYDADPRHFRSQHDGLVSRREKGSSHLNEESELLRGDVDADTESFNSSGKWNESTGKDGSKEYRSKSSVRLSSTKLTTGDVLVYPSSEEEDVCPTCLEEYTEENPKIMTKCSHHYHLGCIYEWMERSDSCPVCGKMMLFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00391 227 CDD RING-H2_AIRP1-like 173 221 - -
Vifa1g00391 227 MobiDBLite consensus disorder prediction 71 150 - -
Vifa1g00391 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 225 - -
Vifa1g00391 227 SMART ring_2 177 217 IPR001841 -
Vifa1g00391 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 222 IPR013083 -
Vifa1g00391 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Vifa1g00391 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Vifa1g00391 227 SUPERFAMILY RING/U-box 172 223 - -
Vifa1g00391 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Vifa1g00391 227 MobiDBLite consensus disorder prediction 85 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00391 Vifa-Chr1 62544641 62546247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00391 1 226 C3H Transcription Factor Family AT5G15790 54.978 7.31e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00391 - - gmx:100788192 380.563