Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00390 ATGTTGCAGAGTATAGGATATGCAAGTTTGCAAAAAGTTGATCCTCAATATGGCCTATATACAAGTATTGTTCCTCCTCTTATTTATGCTGTAATGGGAAGCTCAAGAGACATTGCAATTGGACCTGTAGCTGTAGTGTCTATGCTGTTATCTTCCTTGGTCACAAAAGTCATAGATCCTGTTGCTAATCCTCATGCCTATAGAGATTTTGTCTTCACTGTCACCTTCTTTACTGGAGTTTTTCAAGCCGGATTCGGTATTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCACTAGTTGGATTCATGGCAGGAGCAGCAATCATTATTGGTCTTCAGCAGCTAAAGGGTCTTCTGGGAATTACTCATTTCACCACAAAAACTGATGCAGTATCAGTTTTAGTTTCTGTTTATAAGTCATTACACCAGCAAATTACTTCTTCTGAAGAAAAATGGAGTCCTATGAATTTCGTCCTCGGGTGTTCTTTCTTGATTTTCCTTCTAGTTACTCGATTCATAGGAAGAAGAAACAAAAGGCTTTTCTGGTTGCCTGCGATTGCTCCTCTTCTATCGGTTATACTATCGACTTTAATTGTGTATTTATCGAAAGCTGATAAACAAGGAGTAAATGTGATAAAACATGTCAAAGGAGGATTGAATCAGAGTTCAGTTCATCAGTTACAATTCCATGGTCAAAATGTCGGGCAAGCGGCCAAAATCGGATTAGTCTGTGCAGTTATCGCGCTAACTGAAGCGATGGCTGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCAACTTGACGGGAATAGAGAAATGTTATCAATGGGAATCATGAACATTGCAGGGTCTTTAACTTCATGCTATGTTGCTACCGGTTCTTTTTCAAGGACGGCGGTTAATTTCAGCGCAGGATGTCAAACAGCGGTATCGAATATTGTGATGGCAGTTACTGTGATTTTGTTCCTGCAGTTTTTCGCAAGGCTCTTATACTACACACCTATGGCTATCCTTGCTTCTATCATCCTTTCCGCGCTTCCTGGACTAATAGATTTAAACGAGGCTCGCTATATTTGGAAGGTCGACAAGTTAGACTTTCTTGCATGTATTGGCGCCTTCATTGGCGTCTTGTTTGCATCCGTAGAAATCGGTCTTCTTGTAGCTGTGACAATCTCATTTGCGAAGATACTAATACAATCGATTCGACCGGGAGTAGAAATTCTAGGCCGAGTTCCAAGAACAGAAGCCTTTTGTGACGTTACTCAATATCCGATGGCCATAAGCACACCAGGCATCGTAGTGATTCGCATAAGTTCCGGCTCACTTTGCTTTGCGAACGCCAATTTTGTCAAAGAAAGAATACTCAAGTGGGTCGTGGAAGAAGACGAGATTCAAGAAACCGCTAAAGGAAATGTTCGAGCCATAATTATGGACATGACTAACCTGATGAACGTTGATACTTCCGGAATTCTAGCACTCGAGGAATTGCATAAGAGGTTGCATTCGCGTGGCGTAGAATTAGCTATGGTGAATCCAAGGTGGCTAGTAATTCACAAGCTGAAGCTTGCTCACTTTGTGGACAAAATTGGGAAACAATGGGTTTTTCTGACGGTTGGAGAGGCCGTCGACGCGTGTCTGTCTTCTAAAATTGCTACTGCTTAA 1671 0.4165 MLQSIGYASLQKVDPQYGLYTSIVPPLIYAVMGSSRDIAIGPVAVVSMLLSSLVTKVIDPVANPHAYRDFVFTVTFFTGVFQAGFGIFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGITHFTTKTDAVSVLVSVYKSLHQQITSSEEKWSPMNFVLGCSFLIFLLVTRFIGRRNKRLFWLPAIAPLLSVILSTLIVYLSKADKQGVNVIKHVKGGLNQSSVHQLQFHGQNVGQAAKIGLVCAVIALTEAMAVGRSFASIKGYQLDGNREMLSMGIMNIAGSLTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVILFLQFFARLLYYTPMAILASIILSALPGLIDLNEARYIWKVDKLDFLACIGAFIGVLFASVEIGLLVAVTISFAKILIQSIRPGVEILGRVPRTEAFCDVTQYPMAISTPGIVVIRISSGSLCFANANFVKERILKWVVEEDEIQETAKGNVRAIIMDMTNLMNVDTSGILALEELHKRLHSRGVELAMVNPRWLVIHKLKLAHFVDKIGKQWVFLTVGEAVDACLSSKIATA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00390 556 ProSiteProfiles STAS domain profile. 442 548 IPR002645 -
Vifa1g00390 556 FunFam Sulfate transporter 31 405 551 - -
Vifa1g00390 556 SUPERFAMILY SpoIIaa-like 432 548 IPR036513 -
Vifa1g00390 556 CDD STAS_SulP_like_sulfate_transporter 426 541 - -
Vifa1g00390 556 ProSitePatterns SLC26A transporters signature. 15 36 IPR018045 GO:0008271|GO:0008272
Vifa1g00390 556 NCBIfam sulfate permease 3 544 IPR001902 GO:0016020|GO:0055085
Vifa1g00390 556 PANTHER SULFATE TRANSPORTER 3 549 IPR001902 GO:0016020|GO:0055085
Vifa1g00390 556 Pfam Sulfate permease family 2 373 IPR011547 GO:0016020
Vifa1g00390 556 Pfam STAS domain 426 544 IPR002645 -
Vifa1g00390 556 Gene3D STAS domain 405 551 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00390 Vifa-Chr1 62447577 62450225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00390 3 553 Inorganic Solute Cotransporters AT5G10180 65.343 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00390 K17469 - gmx:100776591 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00390 1 62447577 62450225 Vifa2g01837 2 476493048 476496996 PCT