Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00388 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATCGAGAATACAACAAATCGACAAGTTACATTTTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCTATCCTATGTGATATTGATATTGCACTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGGTACCATACAGAAGGGGTATTCAAAATAAGGAGTATTTGCTCAGGACACTTCAACAGTTGAGGAATGAAAATGACATAGCTCTTCACATGTCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATCGCAGAGGAGCAGATAAGGATATACGAACCCGACCCATTAAAGATGACATCTATGGCAGAGCTTGAAACCAGTGAAAAAAACGTAGTAGAAATATTGGCACGTGTCATGCAGAGAAAGGAACTTTTGTTGAATAATCATCTATCTTCATATGATCCATCGGGTATTCAGGGGATGTCAAGCACTTTCGAAAATGTAGGTTGGCTGCAAGATGGTAATCAGAATCATCAAAATATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACAGTGTATGGTTCATTTTCACAAGGAACAAGCTCAAATGTTGATCCAAGAGCTATAGGTGAATGCCACGTGGCAAATCCAAATGATGCAAATCTTCAAACATGGCCACAAGGATACACATTATATCCTCATCATCAACAACCTCAACAACATCAACATCATCATATTCAACATGACATGGTTAGAACTGATCATCATCAACATCATCATCACCATAATATTCAAGATATGATGCCACATGGACAAATGAACATGCCCATCACTGCCTCACAAGTTGAACCACCAAAAAATGAATCAACAGATCAATATGATCAATGTAAACAGCCTAATCATCAGCTTAATTCATGCTCAATGACACATACTAATTAA 1074 0.3687 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKRRIEDVLTRYINLPDQERDNAVSFPEVPYRRGIQNKEYLLRTLQQLRNENDIALHMSNPGDINSEIEELQQEVSRLQQQLQIAEEQIRIYEPDPLKMTSMAELETSEKNVVEILARVMQRKELLLNNHLSSYDPSGIQGMSSTFENVGWLQDGNQNHQNIFDASAPMDPLRDLSSTVYGSFSQGTSSNVDPRAIGECHVANPNDANLQTWPQGYTLYPHHQQPQQHQHHHIQHDMVRTDHHQHHHHHNIQDMMPHGQMNMPITASQVEPPKNESTDQYDQCKQPNHQLNSCSMTHTN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00388 357 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vifa1g00388 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 FunFam MADS-box transcription factor 41 13 93 - -
Vifa1g00388 357 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 281 - -
Vifa1g00388 357 MobiDBLite consensus disorder prediction 319 357 - -
Vifa1g00388 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vifa1g00388 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g00388 357 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vifa1g00388 357 Coils Coil 126 146 - -
Vifa1g00388 357 MobiDBLite consensus disorder prediction 300 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00388 Vifa-Chr1 62081502 62086445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00388 1 324 Type I MADS-box Gene Family AT1G22130 55.120 4.72e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g00388 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00388 - - gmx:100305913 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00388 1 62081502 62086445 Vifa1g00388 1 62081502 62086445 ECH