Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00381 ATGGGAAGAGGTAGGGTTCAACTCAAACGGATCGAGAACAAAACAAGTCAACAAGTAACATTTTTCAAAAGAAGAACTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCAGCACCAAGCATGGAAGATATTTTGGAAAAATATGAGAGACAAAATCATTCAGAGCTTACTGGAGCTGCAACCAATGAGACACAGGGAAATTGGACTTTTGAATACATGAAGCTAACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGACATGATCTGGATCCTTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTCGACACATCGCTAAAGCGCATCCGGACAAGAAAGAACCAAGTTATGAATCAATCCATCTCCGAGCTGCATAAAAGGGCAAGGGCATTGCAGGAACAAAACAGCAAGTTAGCAAAGACAAAGGAGAAAGAGAAGATAGTGAATGAACATCCACGGAGATGCATTGAAACCAATGCCATAGGGCAATGTTCATCCACTCTCAACTTAGGTTTTCAACCACAGGTTCTACCTCCACAAAGATTGGTTCCTTCTCTATCTCTCAGTGGAGCTATACAAGCAAGAGGGTCAATGGAATTTGAAGAAACAGGTGAAGCTCAAACTGTTCCTAACAACAACAATAATAGTCTTATTCCAGCATGGATGCTACAACATCTTACCAACTAG 774 0.4044 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILEKYERQNHSELTGAATNETQGNWTFEYMKLTAKVQVLERNLRNFVGHDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARALQEQNSKLAKTKEKEKIVNEHPRRCIETNAIGQCSSTLNLGFQPQVLPPQRLVPSLSLSGAIQARGSMEFEETGEAQTVPNNNNNSLIPAWMLQHLTN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00381 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vifa1g00381 257 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vifa1g00381 257 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vifa1g00381 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vifa1g00381 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g00381 257 Coils Coil 124 170 - -
Vifa1g00381 257 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vifa1g00381 257 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g00381 257 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00381 Vifa-Chr1 61932541 61936762 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00381 1 188 MADS-box Gene Family AT1G26310 56.250 1.23e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g00381 K-box 9.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00381 K09264 - gmx:100788956 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05473 1 849354573 849356848 Vifa1g00381 1 61932541 61936762 PCT