Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00377 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAAAACAAGATAAACAGACAAGTAACATTTGCAAAAAGAAGAAATGGTCTTCTTAAAAAAGCCTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTACTCGTGGAAAACTCTATGAGTTTTGCAGCACTTCTAACATGCTCAAAACTCTTGATAGGTACCAGAAGTGTAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTCGAGAGTAGCTACCGGGAATACTTGAAGCTGAAACAACGATTTGAGAATCTTCAAAGAACACAAAGAAATCTTTTAGGGGAAGATTTAGGGCCATTGAGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCTCTGAAGCATGTTAGGTCAACAAAGACACAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAACATATGTTGGTAGAAGCAAACAGATCCTTGTCAATGAAGTTGGACGAAATAAATTCGAGAAATCAGTACAGACAATCATGGGAAGCAGGCGATCAAAGCATGCAATACGCCGATCAACAGAATGCTGCTCACTCTCAAAGCTTCTTCCAGCAACTAGATTGCAATCCAACATTACAAATCGGTTCTGATTATAGGTACAACAATGTAGCATCAGATCAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTGA 753 0.3891 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKHVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLDEINSRNQYRQSWEAGDQSMQYADQQNAAHSQSFFQQLDCNPTLQIGSDYRYNNVASDQIASTSQAQQQVNGFVPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00377 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vifa1g00377 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Vifa1g00377 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vifa1g00377 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g00377 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 Coils Coil 124 144 - -
Vifa1g00377 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 Coils Coil 84 114 - -
Vifa1g00377 250 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g00377 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g00377 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vifa1g00377 250 FunFam MADS-box transcription factor 1 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00377 Vifa-Chr1 61007259 61010322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00377 1 250 MADS-box Gene Family AT5G15800 72.348 1.63e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g00377 K-box 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00377 K09264 - gmx:100785322 430.639