Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00351 ATGTTTAGAGAGGTTCAGAGCCAGTTGGGAAATACAATGAAATCTCCCAATAGTATGATTTTTGATGAGCTTCTAAAAACTGTGATTTCAGATGAAAGTGACCAACTTATGCAAAACCATCCTTCATTTCATCATAATAGTAATTCATCATTTTTTTCTGCGAGCACTAGTGATAGTTTGAATAACAACGAGATATGGAGTGAGATTAACCAACAAAAACATGCAAAAGATAATAATGTTCATTTTGATGAATCAAATTTGGCCATGGCTGCTTCACAGTCACAACATTGGTTACCATTAGAACTGCAAATGCCGGTGTCAATTCCAATGCAAATGCCTTCTATCCAACTCGAGCAACAACGGAATCATCGTCTACAAAATCAACCGATATTAGGGTTATGTCCAAATTTCAATGCTGCACAATCGGTTTATGAGAATAAACCGATGGAGATCGATTACTCCGAAAAATTACTGAATATGTCAATGCCATTATCATCTACACGTTTAGATTCAAATGAAATTGTTGATGCTGCTGCTAGTGTCGGCGTTGGAGTTGAGATGATTGAAAAAACTGTTGAAAGAAAACAGAAGAGAATGGCGAAGAACCGTGAATCTGCCGCAAAATCTAGGGCAAAGAAACAGGAATACATAAATAAGTTACAGATGGAGAAATTTCGATTGGAGAAAATAAATATCGAACTCAAAATGATAGAGAAAATAGATGAAGAATTTTTTTCAAATCTCAAACCAAGATACCAATTAAGACGTACCAGCTCAGCAAAGTTCTAG 789 0.3561 MFREVQSQLGNTMKSPNSMIFDELLKTVISDESDQLMQNHPSFHHNSNSSFFSASTSDSLNNNEIWSEINQQKHAKDNNVHFDESNLAMAASQSQHWLPLELQMPVSIPMQMPSIQLEQQRNHRLQNQPILGLCPNFNAAQSVYENKPMEIDYSEKLLNMSMPLSSTRLDSNEIVDAAASVGVGVEMIEKTVERKQKRMAKNRESAAKSRAKKQEYINKLQMEKFRLEKINIELKMIEKIDEEFFSNLKPRYQLRRTSSAKF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00351 262 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
Vifa1g00351 262 Gene3D - 192 243 - -
Vifa1g00351 262 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 235 IPR004827 GO:0003700|GO:0006355
Vifa1g00351 262 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 259 IPR043452 GO:0003700|GO:0045893
Vifa1g00351 262 CDD bZIP_plant_BZIP46 194 235 - -
Vifa1g00351 262 Pfam bZIP transcription factor 194 236 IPR004827 GO:0003700|GO:0006355
Vifa1g00351 262 SUPERFAMILY Leucine zipper domain 194 236 IPR046347 GO:0003700|GO:0006355
Vifa1g00351 262 SMART brlzneu 190 256 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00351 Vifa-Chr1 56162191 56169095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00351 186 262 bZIP Transcription Factor Family AT3G56850 51.899 1.94e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00351 bZIP_1 6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00351 K14432 - zju:107422670 137.117