Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00347 ATGTTTAGAGAGGTTCAGAGCCAGTTGGGAAATACAATGAAATCTCCCAATAGTATGATTTTTGATGAGCTTCTAAAAACTGTGATTTCAGATGAAAGTGACCAACTTATGCAAAACCATCCTTCATTTCATCATAATAGTAATTCATCATTTTTTTCTGCGAGCACTAGTGATAGTTTGAATAACAACGAGATATGGAGTGAGATTAACCAACAAAAACATGCAAAAGATAATAATGTTCATTTTGATGAATCAAATTTGGCCATGGCTGCTTCACAGTCACAACATTGGTTACCATTAGAACTGCAAATGCCGGTGTCAATTCCAATGCAAATGCCTTCTATCCAACTCGAGCAACAACGGGATCATCGTCTACAAAATCAACAGATATTAGGGTTATGTCCAAATTTCAATGCTGCACAATCGGTTTATGAGAATAAACCGATGGAGATCGATTACTCCGAAAAATTACTGAATATGTCAATGCCATTATCATCTACATGTTTAGATTCAAATGAAATTGTTGTTGCTGCTGCTGGTGTCGGCATTGGAGTTGAGATGATTGAAAAAACTGTTGAAAGAAAACAGAAGAGAATGGCGAAGAACCGTGAATCTGCCGCAAAATCTAGGGCAAAGAAACAGGAATACATAAATAAGTTACAGATGGAGAAATTTCGATTGGAGAAAATAAATATCGAACTCAAAATGATAGAGGATCTTGTAGTTGCGAGGACCATTCCCACCTCCCCTCTCTCCACTGGCCATGCCCTACAACTTTCTCATCTGGATTTGATGTCAGAACAAATAGTATTGGAAATTGAATTGCAAGGATACCTGCACCAATCCATTTAG 852 0.3732 MFREVQSQLGNTMKSPNSMIFDELLKTVISDESDQLMQNHPSFHHNSNSSFFSASTSDSLNNNEIWSEINQQKHAKDNNVHFDESNLAMAASQSQHWLPLELQMPVSIPMQMPSIQLEQQRDHRLQNQQILGLCPNFNAAQSVYENKPMEIDYSEKLLNMSMPLSSTCLDSNEIVVAAAGVGIGVEMIEKTVERKQKRMAKNRESAAKSRAKKQEYINKLQMEKFRLEKINIELKMIEDLVVARTIPTSPLSTGHALQLSHLDLMSEQIVLEIELQGYLHQSI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00347 283 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
Vifa1g00347 283 SUPERFAMILY Leucine zipper domain 194 236 IPR046347 GO:0003700|GO:0006355
Vifa1g00347 283 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 235 IPR004827 GO:0003700|GO:0006355
Vifa1g00347 283 SMART brlzneu 190 253 IPR004827 GO:0003700|GO:0006355
Vifa1g00347 283 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 237 IPR043452 GO:0003700|GO:0045893
Vifa1g00347 283 Gene3D - 192 241 - -
Vifa1g00347 283 Pfam bZIP transcription factor 194 235 IPR004827 GO:0003700|GO:0006355
Vifa1g00347 283 CDD bZIP_plant_BZIP46 194 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00347 Vifa-Chr1 56085700 56092136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00347 186 250 bZIP Transcription Factor Family AT3G56850 50.769 1.59e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00347 bZIP_1 1.6e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00347 K14432 - qsu:112035337 116.701