Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00345 ATGAGTAATAATTCAAAGGAAGTTGAGTTTCCATTGAAACAAGAGATTCACCAAAACTCAAATGATCAACAAGAAAAAGAAAAGGCTTCATCATCATCATTAAACTCGTTATCTTCGACGCAGTGGCCAAGATTGAAAGATCCAAGAATTGTTAGAGTATCAAGAGCCTTTGGTGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGAATAAGACTTTCAGTTCCAACAGCTATTCAACTCTATGATCTTCAAGATAGGAGCAAATTTCAACTTCGGAGTAACAATATTCATTGGGACGGTTCGTCTTCAAGCCATGAATCGAAAGAGGTTTCGAGAGAAATGGTTATGGAAAAAGGGAATTATTGGATGAATAATAGAAGTACTACTCAAGAAGAGGTAAATGTTAACACAAAGCAAGGTAGTAACAATGTTGAAGTTCCTAGTGCAATTGCTTTACCTAATAGTAACAATTTGTTGCAAAGACCAAATCACCCTTCATTTCTTGGTTTGTTAAATACAATGCCATTTGGTTCTAGTTACAATTGGGGAGTTTCTTCAAATGATCATGCTTTTGCAAATCAAGAAGTTGTTAGTGCAATTACATCTTTGCCACCAATGTTGTCTTTATCAACTGGAAATTCTTCTCAAATGTTGTTTGGAACATCACAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGAACATCATCAACAACATCAACATCAACATCAACATCAACATCATCAAAGACAAATCAATAATCATTATCATCAAATGTTGAGTTCGTCGAGTTCGCAAAATCCGTTGAATAATTCTCTCAACAATCCATCTTTCAGTTTGGCCAAATTTCTAGAAAACTCATCAAATAAAGAACAAGGCTTCTCCCCAAAGTGA 921 0.3442 MSNNSKEVEFPLKQEIHQNSNDQQEKEKASSSSLNSLSSTQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRSKFQLRSNNIHWDGSSSSHESKEVSREMVMEKGNYWMNNRSTTQEEVNVNTKQGSNNVEVPSAIALPNSNNLLQRPNHPSFLGLLNTMPFGSSYNWGVSSNDHAFANQEVVSAITSLPPMLSLSTGNSSQMLFGTSQSYFSSNVNAMEMEHHQQHQHQHQHQHHQRQINNHYHQMLSSSSSQNPLNNSLNNPSFSLAKFLENSSNKEQGFSPK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00345 306 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 276 IPR005333 GO:0003700
Vifa1g00345 306 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g00345 306 MobiDBLite consensus disorder prediction 25 41 - -
Vifa1g00345 306 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g00345 306 ProSiteProfiles TCP domain profile. 59 117 IPR017887 -
Vifa1g00345 306 Pfam TCP family transcription factor 59 288 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00345 Vifa-Chr1 55309783 55310895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00345 22 117 TCP Transcription Factor Family AT3G02150 54.286 1.39e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g00345 TCP 6.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00345 - - var:108327895 196.438