Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00338 ATGGATATATATGAGTCATTTCATCAAGTGAACTTGTGGGAAGATAGCTTTAAAGTTGATCATAGCACCTTGAATTCAATTTCTTCACCAATGTTGATGATGAACAATAGTAGCATGGAAAACAAGTCTGAATGTATTCCACATGAATCAAGAGAAGCTTCCGGAGATGATGATCAAGAAACTATTGAAGAACCTATTCCTAAGGTGTTGAGACGGCAAGCACAAAATCGCGAGGCTGCTAGAAAATGTCGACTGCGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGTAGATTGAAGCTCATGCAATTGGAACTTGAGATTGAGAAAACAAGAAAACATGGTTTGAACAGAAGCAGTTCATTAGATGTCGGTTATATCGGATCATCCAGAACAATAAATTCAGCAGGGATATCTTTGTTTGAAATCGAATATGGACGATTGATTGAAGAACAAGATAGACAAAACGAAGAACTAAGAAATGCATTGCAAAATAATGCATCTGATATACAACTTCATCTACTTGTTGAAAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGATTGATGTGTTCTATTTAATCTCTGGCACATGGAAATCGTCGATAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGACCGTCGCAGATTCTAAATATCATTGTACCAAAGCTCGAGGCTTTAACTGATCAACAAACTGGTAGCATTAATAATCTTCGATTATCTTCTCAACAAGCAGAAGATGCTCTTTCAATGGGGTTAGAGAAACTCCAACAGAGTATGATCTATAACATTCAAGCTGATCCCTTGGAATTCGGAAACTATGGTCTTCAAATGGATTATGCCATGGATAAAGGAGAAGCATTAGAAGGCTTTGTAAATCAGGCGGATCATCTAAGAGAACAAACTCTGTTATACATGTCACGCATACTCACAATTGGGCAAGCTGCCCAAGGTTTACTGGCTATGGGGGAATATTTTCATCGTCTTCGCACTCTTAGTTCTTTGTGGACTGCTCGTTCATGTCACCATTTCTACTCTACTCAACATTCAAATTGA 1083 0.3786 MDIYESFHQVNLWEDSFKVDHSTLNSISSPMLMMNNSSMENKSECIPHESREASGDDDQETIEEPIPKVLRRQAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKTRKHGLNRSSSLDVGYIGSSRTINSAGISLFEIEYGRLIEEQDRQNEELRNALQNNASDIQLHLLVESSLNQYSNLFRMKAEAAKIDVFYLISGTWKSSIERLFLWIGGSRPSQILNIIVPKLEALTDQQTGSINNLRLSSQQAEDALSMGLEKLQQSMIYNIQADPLEFGNYGLQMDYAMDKGEALEGFVNQADHLREQTLLYMSRILTIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYSTQHSN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00338 360 ProSiteProfiles DOG1 domain profile. 138 348 IPR025422 GO:0006351|GO:0043565
Vifa1g00338 360 FunFam BZIP family transcription factor 67 116 - -
Vifa1g00338 360 PANTHER TRANSCRIPTION FACTOR TGA9 1 349 - -
Vifa1g00338 360 Coils Coil 87 114 - -
Vifa1g00338 360 SMART brlzneu 63 128 IPR004827 GO:0003700|GO:0006355
Vifa1g00338 360 Pfam bZIP transcription factor 68 97 IPR004827 GO:0003700|GO:0006355
Vifa1g00338 360 SUPERFAMILY Leucine zipper domain 70 100 IPR046347 GO:0003700|GO:0006355
Vifa1g00338 360 Coils Coil 145 169 - -
Vifa1g00338 360 Gene3D - 68 122 - -
Vifa1g00338 360 MobiDBLite consensus disorder prediction 44 61 - -
Vifa1g00338 360 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 71 86 IPR004827 GO:0003700|GO:0006355
Vifa1g00338 360 MobiDBLite consensus disorder prediction 40 61 - -
Vifa1g00338 360 Pfam Seed dormancy control 157 230 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00338 Vifa-Chr1 54171176 54173235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00338 1 352 Calmodulin-binding Proteins AT1G22070 51.206 8.00e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00338 DOG1 5.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00338 K14431 - gmx:100775882 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00338 1 54171176 54173235 Vifa2g01825 2 473349376 473351100 PCT