Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g00337 | ATGGATATATATGAGTCATTTCATCAAGTGAACTTGTGGGAAGATAGCTTTAAAGTTGATCATAGCACCTTGAATTCAATTTCTTCACCAATGTTGATGATGAACAATAGTAGCATGGAAAACAAGTCTGAATGTATTCCACATGAATCAAGAGAAGCTTCCGGAGATGATGATCAAGAAACTATTGAAGAACCTATTCCTAAGGTGTTGAGACGGCAAGCACAAAATCGCGAGGCTGCTAGAAAATGTCGACTGCGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGTAGATTGAAGCTCATGCAATTGGAACTTGAGATTGAGAAAACAAGAAAACATGGTTTGAACAGAAGCAGTTCATTAGATGTCGGTTATATCGGATCATCCAGAACAATAAATTCAGGGATATCTTTGTTTGAAATCGAATATGGACGATTGATTGAAGAACAAGATAGACAAAACGAAGAACTAAGAAATGCATTGCAAAATAATGCATCTGATATACAACTTCATCTACTTGTTGAAAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGATTGATGTGTTCTATTTAATCTCTGGCACATGGAAATCGTCGATAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGACCGTCGCAGATTCTAAATATCATTGTACCAAAGCTCGAGGCTTTAACTGATCAACAAACTGGTAGCATTAATAATCTTCGATTATCTTCTCAACAAGCAGAAGATGCTCTTTCAATGGGGTTAGAGAAACTCCAACAGAGTATGATCTATAACATTCAAGCTGATCCCTTGGAATTCGGAAACTATGGTCTTCAAATGGATTATGCCATGGATAAAGGAGAAGCATTAGAAGGCTTTGTAAATCAGGCGGATCATCTAAGAGAACAAACTCTGTTATACATGTCACGCATACTCACAATTGGGCAAGCTGCCCAAGGTTTACTGGCTATGGGGGAATATTTTCATCGTCTTCGCACTCTTAGTTCTTTGTGGACTGCTCGTTCATGTCACCATTTCTACTCTACTCAACATTCAAATTGA | 1080 | 0.3778 | MDIYESFHQVNLWEDSFKVDHSTLNSISSPMLMMNNSSMENKSECIPHESREASGDDDQETIEEPIPKVLRRQAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKTRKHGLNRSSSLDVGYIGSSRTINSGISLFEIEYGRLIEEQDRQNEELRNALQNNASDIQLHLLVESSLNQYSNLFRMKAEAAKIDVFYLISGTWKSSIERLFLWIGGSRPSQILNIIVPKLEALTDQQTGSINNLRLSSQQAEDALSMGLEKLQQSMIYNIQADPLEFGNYGLQMDYAMDKGEALEGFVNQADHLREQTLLYMSRILTIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYSTQHSN | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g00337 | 359 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 1 | 348 | - | - | |
| Vifa1g00337 | 359 | FunFam | BZIP family transcription factor | 67 | 116 | - | - | |
| Vifa1g00337 | 359 | Coils | Coil | 87 | 114 | - | - | |
| Vifa1g00337 | 359 | ProSiteProfiles | DOG1 domain profile. | 137 | 347 | IPR025422 | GO:0006351|GO:0043565 | |
| Vifa1g00337 | 359 | SMART | brlzneu | 63 | 128 | IPR004827 | GO:0003700|GO:0006355 | |
| Vifa1g00337 | 359 | Pfam | bZIP transcription factor | 68 | 97 | IPR004827 | GO:0003700|GO:0006355 | |
| Vifa1g00337 | 359 | SUPERFAMILY | Leucine zipper domain | 70 | 100 | IPR046347 | GO:0003700|GO:0006355 | |
| Vifa1g00337 | 359 | Gene3D | - | 68 | 122 | - | - | |
| Vifa1g00337 | 359 | MobiDBLite | consensus disorder prediction | 44 | 61 | - | - | |
| Vifa1g00337 | 359 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 71 | 86 | IPR004827 | GO:0003700|GO:0006355 | |
| Vifa1g00337 | 359 | MobiDBLite | consensus disorder prediction | 40 | 61 | - | - | |
| Vifa1g00337 | 359 | Pfam | Seed dormancy control | 156 | 229 | IPR025422 | GO:0006351|GO:0043565 | |
| Vifa1g00337 | 359 | Coils | Coil | 144 | 168 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g00337 | Vifa-Chr1 | 54171176 | 54173235 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g00337 | 1 | 351 | Calmodulin-binding Proteins | AT1G22070 | 51.344 | 1.03e-117 | 344 |
Transcription factors information