Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00337 ATGGATATATATGAGTCATTTCATCAAGTGAACTTGTGGGAAGATAGCTTTAAAGTTGATCATAGCACCTTGAATTCAATTTCTTCACCAATGTTGATGATGAACAATAGTAGCATGGAAAACAAGTCTGAATGTATTCCACATGAATCAAGAGAAGCTTCCGGAGATGATGATCAAGAAACTATTGAAGAACCTATTCCTAAGGTGTTGAGACGGCAAGCACAAAATCGCGAGGCTGCTAGAAAATGTCGACTGCGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGTAGATTGAAGCTCATGCAATTGGAACTTGAGATTGAGAAAACAAGAAAACATGGTTTGAACAGAAGCAGTTCATTAGATGTCGGTTATATCGGATCATCCAGAACAATAAATTCAGGGATATCTTTGTTTGAAATCGAATATGGACGATTGATTGAAGAACAAGATAGACAAAACGAAGAACTAAGAAATGCATTGCAAAATAATGCATCTGATATACAACTTCATCTACTTGTTGAAAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGATTGATGTGTTCTATTTAATCTCTGGCACATGGAAATCGTCGATAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGACCGTCGCAGATTCTAAATATCATTGTACCAAAGCTCGAGGCTTTAACTGATCAACAAACTGGTAGCATTAATAATCTTCGATTATCTTCTCAACAAGCAGAAGATGCTCTTTCAATGGGGTTAGAGAAACTCCAACAGAGTATGATCTATAACATTCAAGCTGATCCCTTGGAATTCGGAAACTATGGTCTTCAAATGGATTATGCCATGGATAAAGGAGAAGCATTAGAAGGCTTTGTAAATCAGGCGGATCATCTAAGAGAACAAACTCTGTTATACATGTCACGCATACTCACAATTGGGCAAGCTGCCCAAGGTTTACTGGCTATGGGGGAATATTTTCATCGTCTTCGCACTCTTAGTTCTTTGTGGACTGCTCGTTCATGTCACCATTTCTACTCTACTCAACATTCAAATTGA 1080 0.3778 MDIYESFHQVNLWEDSFKVDHSTLNSISSPMLMMNNSSMENKSECIPHESREASGDDDQETIEEPIPKVLRRQAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKTRKHGLNRSSSLDVGYIGSSRTINSGISLFEIEYGRLIEEQDRQNEELRNALQNNASDIQLHLLVESSLNQYSNLFRMKAEAAKIDVFYLISGTWKSSIERLFLWIGGSRPSQILNIIVPKLEALTDQQTGSINNLRLSSQQAEDALSMGLEKLQQSMIYNIQADPLEFGNYGLQMDYAMDKGEALEGFVNQADHLREQTLLYMSRILTIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYSTQHSN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00337 359 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Vifa1g00337 359 FunFam BZIP family transcription factor 67 116 - -
Vifa1g00337 359 Coils Coil 87 114 - -
Vifa1g00337 359 ProSiteProfiles DOG1 domain profile. 137 347 IPR025422 GO:0006351|GO:0043565
Vifa1g00337 359 SMART brlzneu 63 128 IPR004827 GO:0003700|GO:0006355
Vifa1g00337 359 Pfam bZIP transcription factor 68 97 IPR004827 GO:0003700|GO:0006355
Vifa1g00337 359 SUPERFAMILY Leucine zipper domain 70 100 IPR046347 GO:0003700|GO:0006355
Vifa1g00337 359 Gene3D - 68 122 - -
Vifa1g00337 359 MobiDBLite consensus disorder prediction 44 61 - -
Vifa1g00337 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 71 86 IPR004827 GO:0003700|GO:0006355
Vifa1g00337 359 MobiDBLite consensus disorder prediction 40 61 - -
Vifa1g00337 359 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Vifa1g00337 359 Coils Coil 144 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00337 Vifa-Chr1 54171176 54173235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00337 1 351 Calmodulin-binding Proteins AT1G22070 51.344 1.03e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g00337 DOG1 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00337 K14431 - gmx:100775882 506.138