Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00334 ATGTCTGGAAAAGGTTTGAAATCTATGAAAGATGAGAAGCATGATTTGCAGAAGCAGATTGGATGCATCACTGGATTTTTCCAGCTCTTTGATCGTCACCGGTTCATTACCAGCCATCGCGCAACTAGTTACATTCCGAATTCATCTTCTTCAGGTGTAAAGAATCAAAAGATTGCAAAAGAGAAGCAACAATTCTCTACAGAATCATCGATAACATCGGTGTCTTCATCATCTTGTTCATCTAGCATGTCATCCATTGATTTCAATAGAATAATCAAGATTGAATCATCGTCAACGAAACATATCCAAACTCCGAAAAAAACACATTCGAGACATCAATCACTTGATTTCTATGATGTTGTCAAAGACTCAATGCATAGAGAAGATAAAGGTTTATATGTGAAAACATTAACGAAGGAAGCGAAAAAGGGTGAAGCTTATGCATTGAATAATCAACACATGGATTCTCCGAGGCCTATGCTATCGAAGAAATCTTTCGATGGAGGAGTTAAGGTTTCGAAAGAACCGTTGCATAATCTTTCGAAGTCGAGAAAACCACACTGGGACTCACCGCGACTCTCTTATGATGCGGTGAAGTCCGCCACAGTGCATAAGGAACTTCCTAGGTTTTCCTTGGACAGCAAGCAAGGTTCTGTTAGACGAATCAGCGAAGGAAACAAGGCTCGCAACGTGTCGAATGGTTCACAAAAAGAATTAGAAACACCAAAAAGATCATCAAGTGTTGTTGCTAAATTGATGGGACTAGAAGCTCTCCCGGACTCGACACAAACTAATCGAACGTCTATCTGCTCAACCGATCAAATACAGCTTAGAGCAAGAACCAGCACAAATGATGAATACAAAAAACACCAAAGTCTGGCGTCCCCGAGCAATAGAAGGGATGATGATTCAATCAAAAATGTGAAACAACATTCGCGATTCGCGATGGAATCAACGAGTCCGTGGAGACAACGTGATGCAGACCAAAGTTCTTTGTTAGAAGATTCTTCAAAGGGAAGCGATTCTGATACAAAAGCATCAAAGTCCTCGATTTCTGTATATGGAGAAATCGAAAAAAGGCTGGCGGAACTCGAGTTCAAAAAGTCGGGAAAGGATCTACGGGCCCTTAAACAGATTCTTGAAGCAATGCAGAGATTCACAGATTCATCATCTGAAACTAGGAACAATAGCACTAGTCTCAGTGAAAGTTCTAAAGTCCAAAGCCCAAGAATACAACAAAAGGACTCGAAATTCATCACGGTTGAGTCGTCGAATTCAATCCTTGATAGTAAATCGCCAATTGTCATCATGAAACCAACAAAAGTGACTAGAAAAGCCAATAATACTCCTTCAACCGAATTTTCAATTCATCGAAGATTGGTCGAAAAACAAAAGGCTAAAGGTATTGTCTCAACCGAAAAAATCACCAAGGAACCTTCAAAATTGATGCAATCATCAAAATCTTCTCAAGACAGAAATGGAAAAAACACCATCAACTCCGATAGCATAACGGTATCTAGGAGTCCAAGACTGCCGAAGAAGTTTGGATTCGAGACGCATTCTCCACCGACCAGTGAGTCATTCGCTCCCACAATTAACAGAAAACAGCATAATAGGCAAATTGTGGAGCTGTCGAAGAATTTGTGTTCATTACATAGACACGACTTCTCCATTTCGCAGGATAGAGATGAACATTTTAGCGAAACAAGTTCTCATTCGACAAAATTTAAGCATCGTGTTAATGTCATTTCTTCGGATTTTGACAATAACAGAAGCTTGGACACTCTAGAAATTGTTCGGATCGATCAATCTGCCAATATCAATCAAAAGGATGAATTTGAAGAGTTGAGGAATGAAAGCTCTAAGGCTGATAAAGTTGCCAATGCTGAACAGCCAAGTCCAGTTTCTGTTCTTGATGCTACATTCTATAAGGAAGATCCACCGTCTCCGGTGAAAAAGATATCGAACATTTCAAGAAAACTCGATGAAGTTTTAAGCATCAATGTTGATATTGAGGAGAATTCAGTTGATCAAATTCTTCGAGAAATTGATTGGAACGATGAAAAACTCGTGAATTTCAATAACATCGAGAATCAAGATCATAAGTATATATCAGAAATACTAATAGCTTCAGGTCTACTCAATCATCAAAACTCTAACGAGTTACTTCATTCACAAGGCACCTTGATTAACCCGAAATTATTCTTAGCACTTGAACAAATGAAGACAAATACGACGCGATTCAATATTGAATACGCAGAGAGAAAACTAAAAGGGAAGAAGCTTTTCGAAGAGCTATGTATAGAAATAGACGAGTTACAACCTCGAAACAAGAATGTCAACTTCGTTCACGAGGATGAGAATTCGATAAGTCTATTGTGCAGAGATTTGAAGGATTGGAACACGGTTTGGACTAACCGTTGCAGCGAAAAATCGAATATCGTGTTGGATATCGAACGGTTGATCTTTAGAGACTTGATAACTGAAGTTTGTGAAAGATGA 2502 0.3901 MSGKGLKSMKDEKHDLQKQIGCITGFFQLFDRHRFITSHRATSYIPNSSSSGVKNQKIAKEKQQFSTESSITSVSSSSCSSSMSSIDFNRIIKIESSSTKHIQTPKKTHSRHQSLDFYDVVKDSMHREDKGLYVKTLTKEAKKGEAYALNNQHMDSPRPMLSKKSFDGGVKVSKEPLHNLSKSRKPHWDSPRLSYDAVKSATVHKELPRFSLDSKQGSVRRISEGNKARNVSNGSQKELETPKRSSSVVAKLMGLEALPDSTQTNRTSICSTDQIQLRARTSTNDEYKKHQSLASPSNRRDDDSIKNVKQHSRFAMESTSPWRQRDADQSSLLEDSSKGSDSDTKASKSSISVYGEIEKRLAELEFKKSGKDLRALKQILEAMQRFTDSSSETRNNSTSLSESSKVQSPRIQQKDSKFITVESSNSILDSKSPIVIMKPTKVTRKANNTPSTEFSIHRRLVEKQKAKGIVSTEKITKEPSKLMQSSKSSQDRNGKNTINSDSITVSRSPRLPKKFGFETHSPPTSESFAPTINRKQHNRQIVELSKNLCSLHRHDFSISQDRDEHFSETSSHSTKFKHRVNVISSDFDNNRSLDTLEIVRIDQSANINQKDEFEELRNESSKADKVANAEQPSPVSVLDATFYKEDPPSPVKKISNISRKLDEVLSINVDIEENSVDQILREIDWNDEKLVNFNNIENQDHKYISEILIASGLLNHQNSNELLHSQGTLINPKLFLALEQMKTNTTRFNIEYAERKLKGKKLFEELCIEIDELQPRNKNVNFVHEDENSISLLCRDLKDWNTVWTNRCSEKSNIVLDIERLIFRDLITEVCER 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00334 833 MobiDBLite consensus disorder prediction 280 349 - -
Vifa1g00334 833 Pfam Domain of unknown function (DUF4378) 700 745 IPR025486 -
Vifa1g00334 833 Pfam Domain of unknown function (DUF4378) 753 829 IPR025486 -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 212 247 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 477 507 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 311 327 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 328 342 - -
Vifa1g00334 833 PANTHER LONGIFOLIA PROTEIN 754 831 IPR033334 GO:0051513
Vifa1g00334 833 MobiDBLite consensus disorder prediction 386 416 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 177 191 - -
Vifa1g00334 833 Pfam DUF761-associated sequence motif 247 262 IPR032795 -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 282 310 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 216 243 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 465 530 - -
Vifa1g00334 833 MobiDBLite consensus disorder prediction 152 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00334 Vifa-Chr1 53677017 53680087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00334 1 831 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 28.367 1.93e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00334 - - psat:127128662 1291.56