Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00330 ATGAACACAGTTAACCAGAGAAAGAAATCCATGGGACGCAAGAAAATCGAAATCAAGAAAGTCGAAAAAGAAACCAACAAACAAGTCACATTCTCCAAAAGAAGATCTGGTTTATTCAAAAAAGCTTGCGAACTTTGCGTCTTAAGCGATGCTAACCTAGCCATCATTGTGTTTTCTCCGGCTGATAAACTATTCTGCTACGGTCGACCCAACACCGACGCTATACTCAACAGTTACATCAAAGGAACCACTTTGTTTGAGGATCAGAACTCGACGGGAGATTCCTCCATCTGTGAGCAGTATAATAGAGAATATGAAGAGGCACTAAAGATGTTGGAAATGGAAAAGAAGAAACTTGCGGATATTGAGAATAGAGTTGGATGGTGGAATGATTCTATTGATGATATGAGTGGTGAACAGCTTGAACAGTTTATGATGTCCATTTTTGAGTTGAGGACGAAGCTTGCTGAAAAAGAACATGAACATCTCATGATGTTTTCTATCTAA 507 0.3905 MNTVNQRKKSMGRKKIEIKKVEKETNKQVTFSKRRSGLFKKACELCVLSDANLAIIVFSPADKLFCYGRPNTDAILNSYIKGTTLFEDQNSTGDSSICEQYNREYEEALKMLEMEKKKLADIENRVGWWNDSIDDMSGEQLEQFMMSIFELRTKLAEKEHEHLMMFSI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00330 168 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 Coils Coil 98 125 - -
Vifa1g00330 168 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Vifa1g00330 168 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 Gene3D - 24 94 IPR036879 GO:0003677|GO:0046983
Vifa1g00330 168 PANTHER MADS BOX PROTEIN 13 156 - -
Vifa1g00330 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Vifa1g00330 168 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00330 Vifa-Chr1 53006745 53007251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00330 8 144 Type I MADS-box Gene Family AT5G60440 44.000 6.18e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g00330 SRF-TF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00330 - - cam:101502875 193.356