Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00321 ATGGAAACCTCCAAAAACAACAAATTTCACCTTAAATTCATCCTACTGTATATCTTTTTGCTATTTTCACCTCTAGTTGTTAACTCATACATCCCTGATTACAATATAGCAATCAATTGTGGGAACTCAGAAAACACTATTGCACACAATCGAACTTGGGTTGGTGATGATAATGATAACTCTAACATCTTTTCCTTCATTGAACCAAAATCCACTAACCCTTCTCTTACACTACAACCTAATTCCCTTGTAAATGCCCAAACTCCATTTTCAAGCGCACGTATCTCTCTCTCAAATTTCACATACTCATTTTCTAGCATCACTACTTCCCCGGTTTTTATTCGCCTTCATTTTTACGCAACTTCCTACAACCATAGCTTTGATCCTTCTAATGCAATTTTCTCTGTTATAGTAAACAATAACCTTACCCTTCTTAAAAACTTCAACCCTTCACTTTGGCATCATGAAGACGACGACGAAAAAATCACCAAAGAATATTGCATACAAATCCAACCAAATGAGAAGCTAAACATAACTTTCATTCCCAACAAGGGAAACACATCAAATGTTTATTATGCTTTCGTTAATGGAATCGAAGTTGTGTCCATGCCTTCTTTTCTCTATTACACTAATCTAGATGACTCAAACTACCGTTTCAAGTTTCTTGACTTCGACCAGGAATACCAAATTCTTAAAGATATAGCTTTGGAGACGGTTTATAGAGTCAACGTTGGTGGTACTCAAGTTGCAGCAAATGATGATGATACAGGTATGTTTCGTAATTGGGACAGTGATTTTTCTCGTTACTTGGAGAAACGATATCCACAAAGTGAATTTTCTGTTTTTGGTAATCCTCTCAACTATCTACACAATACGATTCCAAATTATACTGCACCGGAAAATGTATACAGAACTGCAAGAAGTTATGGAATGGATGCCACAGAAGATTATAATGTAACATGGAATTTTGAAGTTGATTCTGGTTTTACTTATATGGTAAGGTTACATTTTTGTGAGATTGATTATAACATGAAGAATAAAGTGGATAGAGTTTTTCAGATATTTATAGATGATATTATGGCTGAAAAAGCTGCTGATGCGGTTGAATGGAGTGGTGCTCCTTTGATTCCAGTTCATAAGGACTATGCTGTCATTATGAACTCTCAACAAATTGAAAGAGTCAATCTATCAGTCAAGCTTCAACGAGTACCACTAACTATCTACACAAAATACCGTGATGTCTTGCTGAATGGAATTGAGATTTTTAAAGTAAGTGATACAAGTTACAATCTTGCAGGATTGAATCCCAAATATTTAACTCCAAAAGAACAAGAATCACCAAATCAGCCACCAAAGTCAAAGAAGTCACACATAGTCATGATTGTTGTAGTTGGAGTTTCGTGTCTCTTGCTAGCATTAGCTGTTGTGGGAACAATGGTTATTGTTAGAAGAAGAAGAACATTTGAGGCTCCTCTTGAAATGGAAGAAAGTTCATGGAAAATACGAAAAGAAAGTTCCTCAACTTTACCATCACATTTGTGCCGCTATTTCACAATAGCAGAGATAAGAGCGGCTACAAACAACTTCGAAGATATTTTTATCATCGGAGTTGGAGGGTTTGGCAATGTGTACAAAGGTTACATCGATGGAGCAATACCCGTTGCTATAAAGCGTCTGAAATCGGGCTCTCAGCAAGGTGAAAACGAGTTCTTGAATGAAATCGAGTTGCTTTCTCAACTTCGTCATAATCACTTGGTTTCCCTTATTGGATATTGCAATGATGGTGTAGAGATGATTCTTGTTTACGATTTCATGCAACGCGGTACCCTTCGTGAGTATCTCTATGGTTCAGACAATGAACCTCTTACTTGGAAGCAAAGACTCGAGATTGTATTGGGTGCTGCGAGAGGGTTGCATTATCTTCATACAGGTGCGAAGCATAACATCATACATCGCGATGTGAAGAGTACCAACATATTGTTAGATGAGAAATGGGTGGCTAAGGTTTCTGATTTCGGACTATCAAAAGTTGGTCCAACTGGAATGTCGATGACCCATGTCAGCACTGTGGTGAAAGGTAGTCTCGGGTATTTGGATCCGGAGTACTACTTACGTCAAAGGTTGACTCTTAAGTCTGATGTTTACTCTTTCGGTGTAGTGCTTCTTGAGGTGTTGTGTGCAAGACCTCCTTTAATGCGTTCTCTTGATAAGAAAAACGTGAGTTTGGTTGTTCGTTTTCAAAGATGTTATAAAGAAGGTGTGATAATTGAAGAGATGGTAGATCCATTCATAAAGGATTCTATAACAGATGAGTGTTTGAAATCTTACTGTCAGATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAGAGGATGTCGATGAGTGATGTTGTTGGGGCGTTAGAGTTTGCATTGCAGTTGGAGATGAGTGAGGAGGATAGTAAGTTTGGTGGGACTCAAGAAAAGGGAAAAAGTGCGAAAATGATACAATATCCAAAGTTTGCGAGTGATGATGGCAGTGACATGCGTTTCACGAGTAGTAGTGGTGACTATGGGTCTCATACCAGCAAGGTAAGTATCATTTCAGCCACTAGTGAAGATCAACCTTTGTTTTCTACTGATGTTTTTTCTGAAGTTGGGAATCAAAGAGCACGTTAG 2658 0.38 METSKNNKFHLKFILLYIFLLFSPLVVNSYIPDYNIAINCGNSENTIAHNRTWVGDDNDNSNIFSFIEPKSTNPSLTLQPNSLVNAQTPFSSARISLSNFTYSFSSITTSPVFIRLHFYATSYNHSFDPSNAIFSVIVNNNLTLLKNFNPSLWHHEDDDEKITKEYCIQIQPNEKLNITFIPNKGNTSNVYYAFVNGIEVVSMPSFLYYTNLDDSNYRFKFLDFDQEYQILKDIALETVYRVNVGGTQVAANDDDTGMFRNWDSDFSRYLEKRYPQSEFSVFGNPLNYLHNTIPNYTAPENVYRTARSYGMDATEDYNVTWNFEVDSGFTYMVRLHFCEIDYNMKNKVDRVFQIFIDDIMAEKAADAVEWSGAPLIPVHKDYAVIMNSQQIERVNLSVKLQRVPLTIYTKYRDVLLNGIEIFKVSDTSYNLAGLNPKYLTPKEQESPNQPPKSKKSHIVMIVVVGVSCLLLALAVVGTMVIVRRRRTFEAPLEMEESSWKIRKESSSTLPSHLCRYFTIAEIRAATNNFEDIFIIGVGGFGNVYKGYIDGAIPVAIKRLKSGSQQGENEFLNEIELLSQLRHNHLVSLIGYCNDGVEMILVYDFMQRGTLREYLYGSDNEPLTWKQRLEIVLGAARGLHYLHTGAKHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCARPPLMRSLDKKNVSLVVRFQRCYKEGVIIEEMVDPFIKDSITDECLKSYCQMVLSCLHDDGNQRMSMSDVVGALEFALQLEMSEEDSKFGGTQEKGKSAKMIQYPKFASDDGSDMRFTSSSGDYGSHTSKVSIISATSEDQPLFSTDVFSEVGNQRAR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00321 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vifa1g00321 885 PANTHER OS03G0124300 PROTEIN-RELATED 13 498 IPR046957 GO:0004672
Vifa1g00321 885 CDD STKc_IRAK 535 802 - -
Vifa1g00321 885 Pfam Malectin-like domain 38 424 IPR024788 -
Vifa1g00321 885 Gene3D Transferase(Phosphotransferase) domain 1 605 824 - -
Vifa1g00321 885 FunFam FERONIA receptor-like kinase 35 204 - -
Vifa1g00321 885 FunFam FERONIA receptor-like kinase 234 425 - -
Vifa1g00321 885 Gene3D Phosphorylase Kinase; domain 1 492 604 - -
Vifa1g00321 885 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Vifa1g00321 885 Pfam Protein tyrosine and serine/threonine kinase 535 800 IPR001245 GO:0004672|GO:0006468
Vifa1g00321 885 ProSiteProfiles Protein kinase domain profile. 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00321 885 SUPERFAMILY Protein kinase-like (PK-like) 504 803 IPR011009 -
Vifa1g00321 885 FunFam receptor-like protein kinase FERONIA 493 604 - -
Vifa1g00321 885 SMART serkin_6 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00321 885 FunFam Receptor-like protein kinase FERONIA 605 823 - -
Vifa1g00321 885 Gene3D - 234 425 - -
Vifa1g00321 885 Gene3D - 33 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00321 Vifa-Chr1 51005292 51007949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00321 30 885 Receptor kinase-like Gene Family AT3G51550 42.968 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g00321 Malectin_like 9.1e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00321 - - mtr:25497555 1051.58