Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00316 ATGGCTTCCAACAAAAACAACATTCAAATCCATGAACACATTAAAGTTGTTCCTCCATCATCATCACCAACAACAACTCCTCTCACTTTTTTTGACATAATATGGTTAGATTTCCATCCATCAGAGCGAATATACTTTTACGCCCTTCATGATCAACACTCCCACCCCTCTTTCTTCTTTCAAGAAATTGTTCCAAATCTCAAATCTTCACTCTCTTTAACCCTCGAACACTTTCTCCCTTTAGCTGGTAAAATTGTTTGGCCTTCTGATTCTTTAAAACCATTCATCCAATTCAATCCCAATGATGATGATGATAATGGAGTTTCATTGCTCATAGCTGAGTCTGATGCTGATTTCAATCATGTCATTGGAAACTCACCCCATGAAGCTTTATTGACTCGTTCTTTTATTCCCAACTTGGAATCATCAGATTCGTTTGCTTCTACTATGTCCCTCCAAATCACACTTTTCCCAAATTGTGGCTTCAGCATAGGAATCACTACACACCATGTTGTTTTTGATGGAAAATCTTTATCTATGTTCGTCAAAGCTTGGGCTTGTCTATGCAACAAAATAATCGGATTTGAAACACCAACTTTGTTGCCAGAGTTAGAGCCTTTATTCAACAGAGATATCATCAAAGGCACAAATGAAAATAACGCAATCGAGATCTTATCGAAGATATCCCCAACTGAAAAAAGAAATAAAAGGAGTCTAAAGATTTCACCTTCGGAACCAAAACTCGAAGACTCTCTTCGTGCTACGTTCAAGCTCACACGTGAAGATTTGGATAAAATAAAGCAATATGTGTTATCCAAATGGGAAACATTCAATCCAAATGAATCAAAGCCAGAGACTCTATCATCTTTTATTCTCACTTGTGCTTATTCACTTGTTTGTATTGCAAAAGCTATTCATGGAGTTGAAAAAGAGAAAGAAAAGTTTGCATTGGTTTTTGTAATAGATTGCAGAGCAAGGTTGGAACCAGCAATACCAAGTAATTATTTCGGTAATTGTTTATTGGGGGATTTCATTGATACAAAACCATTTGATTTCAAAAACGAAGATGGTGTCTTCCTAGTTGCCAAGTGTATTTATGAGAAAATAAAGATGATAAATGAAAAGGGAATTTTTGAAGAAATGATTTTTGATATATTTGATAGATTTAAAACTTTATATAATGAAAGATATGAAATTTTTGGGGTTGCTGGGTCTAATAGATTTTGTGTTTATAAGAATGATTTTGGTTATGGAAGGCCAGAAAAGGTGGAGATTGTGTCCATAGATAGAGATTTATCAATTGGTTTTGGAGATAGCAAAGATGGCAATGGTGGAGTTGAAATTGGTCTTGTTCTCAATAAACATGTAATGGATCTCTTCAGCACTTTCTTTCTTGAAGGACTATGTGGTAATTGA 1416 0.351 MASNKNNIQIHEHIKVVPPSSSPTTTPLTFFDIIWLDFHPSERIYFYALHDQHSHPSFFFQEIVPNLKSSLSLTLEHFLPLAGKIVWPSDSLKPFIQFNPNDDDDNGVSLLIAESDADFNHVIGNSPHEALLTRSFIPNLESSDSFASTMSLQITLFPNCGFSIGITTHHVVFDGKSLSMFVKAWACLCNKIIGFETPTLLPELEPLFNRDIIKGTNENNAIEILSKISPTEKRNKRSLKISPSEPKLEDSLRATFKLTREDLDKIKQYVLSKWETFNPNESKPETLSSFILTCAYSLVCIAKAIHGVEKEKEKFALVFVIDCRARLEPAIPSNYFGNCLLGDFIDTKPFDFKNEDGVFLVAKCIYEKIKMINEKGIFEEMIFDIFDRFKTLYNERYEIFGVAGSNRFCVYKNDFGYGRPEKVEIVSIDRDLSIGFGDSKDGNGGVEIGLVLNKHVMDLFSTFFLEGLCGN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00316 471 Gene3D - 247 469 IPR023213 -
Vifa1g00316 471 PANTHER - 8 468 - -
Vifa1g00316 471 Gene3D - 3 235 IPR023213 -
Vifa1g00316 471 Pfam Transferase family 18 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00316 Vifa-Chr1 49723072 49724487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00316 8 466 Monolignol Biosynthesis Gene Families AT5G48930 23.061 1.50e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00316 - - tpra:123889238 644.425