Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00308 ATGCAACTGGAGCACGAAATTGCACTTTTGAGTCAGTTTGAACATGAGAATATAGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATCTTTATCGAATTTGTAACCAAAGGTTCCCTTTTAAGCCTCTACCGGAGGTATAAACTTCGAGATTCCCAAGTATCTGCTTATACGAGACAAATTCTGAACGGTTTAAAGTATCTTCATGATCGCAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTTGATGCAAATGGATCTGTCAAGGTTGCGGATTTTGGATTGGCAAAGGCAATTAAATTGAATGATGTTAAATCATGTCAGGGAACAGCATTCTGGATGGCACCAGAGGTTGTAAAAGGAAAAGTGAAAGGTTATGGACTTCCTGCTGATATATGGAGTCTAGGATGCACTGTGCTGGAGATGTTAACTGGGCATATTCCCTACCATCCTATGGAATGTATCAGCGCAATGTTTAGAATTGGAAAAGGTGAACTACCTCCAGTACCTGATTCTCTCTCAAGAGATGCACGTGATTTCATCCTGCAGTGTCTTAAAGTTAATCCAGATGATCGTCCCACTGCGGCACAACTCCTAGACCACAAATTTGTCCAGAGGTCATTCTCCCAATCCTCTGGCTCTGCATCTCCATATACTATGAGAAGAGGTTAA 690 0.4014 MQLEHEIALLSQFEHENIVRYIGTEMDESNLYIFIEFVTKGSLLSLYRRYKLRDSQVSAYTRQILNGLKYLHDRNIVHRDIKCANILVDANGSVKVADFGLAKAIKLNDVKSCQGTAFWMAPEVVKGKVKGYGLPADIWSLGCTVLEMLTGHIPYHPMECISAMFRIGKGELPPVPDSLSRDARDFILQCLKVNPDDRPTAAQLLDHKFVQRSFSQSSGSASPYTMRRG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00308 229 SMART serkin_6 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00308 229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Vifa1g00308 229 Pfam Protein kinase domain 3 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00308 229 SUPERFAMILY Protein kinase-like (PK-like) 2 215 IPR011009 -
Vifa1g00308 229 FunFam Protein kinase byr2-like 43 218 - -
Vifa1g00308 229 PRINTS Tyrosine kinase catalytic domain signature 70 88 IPR001245 GO:0004672|GO:0006468
Vifa1g00308 229 PRINTS Tyrosine kinase catalytic domain signature 136 158 IPR001245 GO:0004672|GO:0006468
Vifa1g00308 229 PRINTS Tyrosine kinase catalytic domain signature 35 48 IPR001245 GO:0004672|GO:0006468
Vifa1g00308 229 PRINTS Tyrosine kinase catalytic domain signature 179 201 IPR001245 GO:0004672|GO:0006468
Vifa1g00308 229 PIRSF ILK 1 215 - -
Vifa1g00308 229 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00308 229 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 223 - -
Vifa1g00308 229 Gene3D Transferase(Phosphotransferase) domain 1 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00308 Vifa-Chr1 48612133 48616631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00308 2 212 MAP Kinase Kinase Kinase AT4G08500 72.170 5.12e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa1g00308 Pkinase 3.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00308 K13414 - mtr:11436045 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00308 1 48612133 48616631 Vifa1g00308 1 48612133 48616631 ECH