Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00306 ATGGCTCCCAACAACATTAAAATCCACGAACATTTCAAAGTTGTTCCAACATCATCAACCCAAACAACAACCCCTCTCACTTACTTTGATATATTTTGGCTAAGGTTTCATCCAGTAGAACGTGTCTTCTTCTACACCCTCCCAAATTCACAATCACACCCCTCTTTCTTCTTCCAAAACCTTGTTCCAAATCTCAAATCTTCACTTTCTTTAACCCTCCAACACTTTCCTCCTTTAGCTGGTAAAATCGTTTGGCCTTCTGATTCTTCAAAACCATTCATCCAATTCAATCCCAATGATGATGATAATGGAGTTCCATTGCTCATTGCAGAATCTAGTTTAGACTTCAACCATGTCATAGAAAATTCACCACAAGAAGCTTCGTTGTCTCGTTCTCTTATACCCTATTTAGAATCAACAGATTCTTTTGCTTCTGTTATGTCCATTCAAATAACCCTTTTTCCAAAAAATGGTTTTTCTATTGGTATCACCACACACCATGCCGTTCTTGATGGGAAATCTTCAACCATGTTCATCAAAGCATGGGCTTATCTATGCAACAAAGTCATCAAAACCGAAGAAGAATCACCAACTTTGTTACCAGAGTTAGAGCCTTTATTCAACAGAGAAATCATCAAAGAAAGTAACTCAATTGAGAGCTTATCCAAGATATTCCCAAGTGAAAAGGGAAACGAAAGAAGCCTAAAGATTTTTCCGTTTGAACCAAAACTCGAAGAATCTGTCCGTGCCACGTTCAAGCTCACATGTGAAGACTTGGATAAAATAAAACAAAGGGTGTTATCCAAATGGGAAATATTCGATACAAATGAATCAAAGCCAGAGAATTTATCGTCGTTTGTTCTCACATGTGCTTATTCTCTTGTTTGTATTGCAAAAGCTTTTCAAGGAGTTGAAAAGGAGAAAGAGAAGTTTACATTTGCTTTCACCATAGATTGCAGATCAAGGTTAGAACCACCAATACCAAATAACTATTTCGGAAACTGTGTATTAGGGCATTTCATTAATACACAACCATTGGATTTCATAAAAGAAGATGGTTTGAATTTAGTTTCTAAAAGTATTTATGACCAAATAAAGCTTATAAAAGAAAAGGGTGTTTTTGAAGGAACTAAAGATGTGTTTGCTAAATATACTTCTTTGGCAAGTGAAGGAGTTGAAATTATAGGAGTGGCAGGGTCTAATAGATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCGGAAAAGGTGGAGATAGTGTCGATCGATAGAGGTTTAACAATTGGTTTGGCAGAGAGCAAAGATGGCAATGGTGGAGTTGAAGTTGGTCTTGTTCTTAAGAAAGATGTAATGGATCTCTTTAGCACTTTGTTTCTTGAAGGACTAAGCATTGATTGA 1401 0.3676 MAPNNIKIHEHFKVVPTSSTQTTTPLTYFDIFWLRFHPVERVFFYTLPNSQSHPSFFFQNLVPNLKSSLSLTLQHFPPLAGKIVWPSDSSKPFIQFNPNDDDNGVPLLIAESSLDFNHVIENSPQEASLSRSLIPYLESTDSFASVMSIQITLFPKNGFSIGITTHHAVLDGKSSTMFIKAWAYLCNKVIKTEEESPTLLPELEPLFNREIIKESNSIESLSKIFPSEKGNERSLKIFPFEPKLEESVRATFKLTCEDLDKIKQRVLSKWEIFDTNESKPENLSSFVLTCAYSLVCIAKAFQGVEKEKEKFTFAFTIDCRSRLEPPIPNNYFGNCVLGHFINTQPLDFIKEDGLNLVSKSIYDQIKLIKEKGVFEGTKDVFAKYTSLASEGVEIIGVAGSNRFGVYETDFGWGRPEKVEIVSIDRGLTIGLAESKDGNGGVEVGLVLKKDVMDLFSTLFLEGLSID 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00306 466 Gene3D - 244 466 IPR023213 -
Vifa1g00306 466 PANTHER - 6 464 - -
Vifa1g00306 466 FunFam Phenolic glucoside malonyltransferase 1 244 465 - -
Vifa1g00306 466 Pfam Transferase family 13 456 - -
Vifa1g00306 466 Gene3D - 2 231 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00306 Vifa-Chr1 48065940 48067340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00306 6 461 Monolignol Biosynthesis Gene Families AT5G48930 23.840 2.35e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00306 - - tpra:123889238 696.041